miRNA display CGI


Results 61 - 80 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 200606 0.66 0.898636
Target:  5'- aCAUUGAgCACCGCaagaGCCGcGCGGUCGuCg -3'
miRNA:   3'- -GUGGCU-GUGGUGg---UGGC-CGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 208351 0.68 0.780969
Target:  5'- -cCCGACGCCAUC-CCGGaAGuCCGAg -3'
miRNA:   3'- guGGCUGUGGUGGuGGCCgUC-GGCUg -5'
10385 5' -60.6 NC_002687.1 + 210290 0.66 0.892587
Target:  5'- gCACCacCGCCACCACgGGCAccacuGCCa-- -3'
miRNA:   3'- -GUGGcuGUGGUGGUGgCCGU-----CGGcug -5'
10385 5' -60.6 NC_002687.1 + 210341 0.74 0.447847
Target:  5'- cCACCGGCACCacgggcaccaucugcACCACCGGCAccaCgGGCa -3'
miRNA:   3'- -GUGGCUGUGG---------------UGGUGGCCGUc--GgCUG- -5'
10385 5' -60.6 NC_002687.1 + 212719 0.69 0.746013
Target:  5'- gACCaaGACuGCCACCACCG-CuGUCGACg -3'
miRNA:   3'- gUGG--CUG-UGGUGGUGGCcGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 214765 0.66 0.859498
Target:  5'- --gCGACuCCACCACCGGCgcaAGUgCGAg -3'
miRNA:   3'- gugGCUGuGGUGGUGGCCG---UCG-GCUg -5'
10385 5' -60.6 NC_002687.1 + 224151 0.68 0.772382
Target:  5'- gCGCUGGCGCUGgCGCUGGCGG-UGGCg -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 224520 0.66 0.886343
Target:  5'- -cCCGcCACCGCCACCGcCAGCg--- -3'
miRNA:   3'- guGGCuGUGGUGGUGGCcGUCGgcug -5'
10385 5' -60.6 NC_002687.1 + 224546 0.71 0.597141
Target:  5'- cCACCGcCACCGCCACCaGCAcuGCCc-- -3'
miRNA:   3'- -GUGGCuGUGGUGGUGGcCGU--CGGcug -5'
10385 5' -60.6 NC_002687.1 + 224630 0.69 0.7097
Target:  5'- gCAUCGGCAUCGgCAUCGGCA-UCGGCa -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 224690 0.69 0.71888
Target:  5'- cCAUCGcCACCACCACCaGCAcuGCCa-- -3'
miRNA:   3'- -GUGGCuGUGGUGGUGGcCGU--CGGcug -5'
10385 5' -60.6 NC_002687.1 + 224750 0.69 0.7097
Target:  5'- gCAUCGGCAUCGgCAUCGGCA-UCGGCa -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 224855 0.77 0.329762
Target:  5'- cCGCCGACGCgGCggCGCCGGCAcgGUCGGCa -3'
miRNA:   3'- -GUGGCUGUGgUG--GUGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 225212 0.78 0.296694
Target:  5'- uGCCGGCGCCGCCGCguCGGCGGCucucCGAUc -3'
miRNA:   3'- gUGGCUGUGGUGGUG--GCCGUCG----GCUG- -5'
10385 5' -60.6 NC_002687.1 + 225340 0.67 0.814111
Target:  5'- cCACCGccgcuguccccaACACCACCccccucuCCGGCuccAGCuCGACc -3'
miRNA:   3'- -GUGGC------------UGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 225419 0.66 0.892587
Target:  5'- -uCCGGCugCAgCC-CCaGCuGCCGGCa -3'
miRNA:   3'- guGGCUGugGU-GGuGGcCGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 226014 0.69 0.746013
Target:  5'- cCGCCcACGCCACCccccuguCCGGCuccAGCuCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 226074 0.68 0.784372
Target:  5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugaguAGCCGuCu -3'
miRNA:   3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 226200 0.69 0.7097
Target:  5'- cCGCCcACACCACCccccucuCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 226260 0.66 0.862313
Target:  5'- uUAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3'
miRNA:   3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.