miRNA display CGI


Results 81 - 100 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 226386 0.69 0.7097
Target:  5'- cCGCCcACACCACCccccucuCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 226446 0.68 0.784372
Target:  5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3'
miRNA:   3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 226572 0.69 0.746013
Target:  5'- cCGCCcACGCCACCccccuguCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 226632 0.68 0.784372
Target:  5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3'
miRNA:   3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 226758 0.69 0.7097
Target:  5'- cCGCCcACACCACCccccuguCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 227117 0.76 0.350872
Target:  5'- uCACCGcUACCACCACCGccGCuGCCGAg -3'
miRNA:   3'- -GUGGCuGUGGUGGUGGC--CGuCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 227165 0.88 0.065898
Target:  5'- cCACCGcCACCGCCACCGGCA-CCGGCa -3'
miRNA:   3'- -GUGGCuGUGGUGGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 227214 0.68 0.763689
Target:  5'- aCAUCGGCGCa--CACCGGCAGguCgGACg -3'
miRNA:   3'- -GUGGCUGUGgugGUGGCCGUC--GgCUG- -5'
10385 5' -60.6 NC_002687.1 + 227315 1.09 0.00262
Target:  5'- cCACCGACACCACCACCGGCAGCCGACg -3'
miRNA:   3'- -GUGGCUGUGGUGGUGGCCGUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 237074 0.68 0.772382
Target:  5'- uCGCCGACGuCCGCCuugauACaucugaGGguGUCGACg -3'
miRNA:   3'- -GUGGCUGU-GGUGG-----UGg-----CCguCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 240200 0.71 0.615965
Target:  5'- uGCCaGCAuCCGCCG-CGGCGGCCGGa -3'
miRNA:   3'- gUGGcUGU-GGUGGUgGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 241048 0.68 0.763689
Target:  5'- aACUGAacUACCACCACCGuCAuCCGGCu -3'
miRNA:   3'- gUGGCU--GUGGUGGUGGCcGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 241183 0.66 0.873288
Target:  5'- gACCGGucggUACCACCACaCGucguGUGGCCGAg -3'
miRNA:   3'- gUGGCU----GUGGUGGUG-GC----CGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 241452 0.67 0.814111
Target:  5'- gCACCGuCGCCAagaauuCCGCCaGCuuGUCGACg -3'
miRNA:   3'- -GUGGCuGUGGU------GGUGGcCGu-CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 241509 0.7 0.65369
Target:  5'- uGCCGAaaucaCGCCGCCACCGuuGGCCa-- -3'
miRNA:   3'- gUGGCU-----GUGGUGGUGGCcgUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 248746 0.66 0.85879
Target:  5'- aCACCGACGCUcuucaaCGCCGGUaccgucaacaaucAGCUGAg -3'
miRNA:   3'- -GUGGCUGUGGug----GUGGCCG-------------UCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 249199 0.66 0.880561
Target:  5'- -uCCGACGCCccggaccucaucgauCUACaCGGC-GCCGACu -3'
miRNA:   3'- guGGCUGUGGu--------------GGUG-GCCGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 252344 0.66 0.898636
Target:  5'- uGCCGAgGaCGCCGCgCGaCGGCCGAUc -3'
miRNA:   3'- gUGGCUgUgGUGGUG-GCcGUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 252584 0.66 0.859498
Target:  5'- aGCCGACAgaGCCGuCUGGCGcCCGAa -3'
miRNA:   3'- gUGGCUGUggUGGU-GGCCGUcGGCUg -5'
10385 5' -60.6 NC_002687.1 + 256018 0.68 0.772382
Target:  5'- cCACCGuCAUCACCAcacggacuucccCCGGCGGCgaaGAa -3'
miRNA:   3'- -GUGGCuGUGGUGGU------------GGCCGUCGg--CUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.