miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 292435 0.71 0.638606
Target:  5'- gCGCCGcgGCCGCCACCgcuuccaguuggcgaGGCGGCCG-Cu -3'
miRNA:   3'- -GUGGCugUGGUGGUGG---------------CCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 291262 0.69 0.71888
Target:  5'- gGCCGACugCACUGCCgaagugagccagGGCAGCUa-- -3'
miRNA:   3'- gUGGCUGugGUGGUGG------------CCGUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 284972 0.66 0.873288
Target:  5'- -gUCGACAgCAU--UCGGCAGCCGAa -3'
miRNA:   3'- guGGCUGUgGUGguGGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 283269 0.7 0.672491
Target:  5'- -uCCGACACCcCCGCCucGGCAuCUGGCg -3'
miRNA:   3'- guGGCUGUGGuGGUGG--CCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 282306 0.67 0.85234
Target:  5'- -cCCGGCACCGCC-CCuGCuccuGCCG-Cg -3'
miRNA:   3'- guGGCUGUGGUGGuGGcCGu---CGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 281319 0.75 0.411716
Target:  5'- cCGCCGcUGCCGCCACCcaGGCccccGCCGACg -3'
miRNA:   3'- -GUGGCuGUGGUGGUGG--CCGu---CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 279626 0.7 0.690248
Target:  5'- uGCCGGCACCACCugCugcucguGGUAG-UGGCg -3'
miRNA:   3'- gUGGCUGUGGUGGugG-------CCGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 279528 0.67 0.829867
Target:  5'- -uCCGGCACCGCCGCUGcGCAcGCg--- -3'
miRNA:   3'- guGGCUGUGGUGGUGGC-CGU-CGgcug -5'
10385 5' -60.6 NC_002687.1 + 279284 0.67 0.829867
Target:  5'- uGCCGGCACCACCGgCCcaccagaagaGuCAGCgGACc -3'
miRNA:   3'- gUGGCUGUGGUGGU-GG----------CcGUCGgCUG- -5'
10385 5' -60.6 NC_002687.1 + 279093 0.66 0.873288
Target:  5'- cUACCaGGCGCUcCC-CCGGCAccaCCGACa -3'
miRNA:   3'- -GUGG-CUGUGGuGGuGGCCGUc--GGCUG- -5'
10385 5' -60.6 NC_002687.1 + 279068 0.66 0.892587
Target:  5'- gGCCucaaacuCGCCGCCAUCGGCuguGuCUGGCg -3'
miRNA:   3'- gUGGcu-----GUGGUGGUGGCCGu--C-GGCUG- -5'
10385 5' -60.6 NC_002687.1 + 278979 0.66 0.873288
Target:  5'- cCAgCGAUgcucCCACCAgCGGCAGUgGAa -3'
miRNA:   3'- -GUgGCUGu---GGUGGUgGCCGUCGgCUg -5'
10385 5' -60.6 NC_002687.1 + 278881 0.67 0.814111
Target:  5'- uCGCUGACACC-CUucgaauacCCGGCAGCCc-- -3'
miRNA:   3'- -GUGGCUGUGGuGGu-------GGCCGUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 256018 0.68 0.772382
Target:  5'- cCACCGuCAUCACCAcacggacuucccCCGGCGGCgaaGAa -3'
miRNA:   3'- -GUGGCuGUGGUGGU------------GGCCGUCGg--CUg -5'
10385 5' -60.6 NC_002687.1 + 252584 0.66 0.859498
Target:  5'- aGCCGACAgaGCCGuCUGGCGcCCGAa -3'
miRNA:   3'- gUGGCUGUggUGGU-GGCCGUcGGCUg -5'
10385 5' -60.6 NC_002687.1 + 252344 0.66 0.898636
Target:  5'- uGCCGAgGaCGCCGCgCGaCGGCCGAUc -3'
miRNA:   3'- gUGGCUgUgGUGGUG-GCcGUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 249199 0.66 0.880561
Target:  5'- -uCCGACGCCccggaccucaucgauCUACaCGGC-GCCGACu -3'
miRNA:   3'- guGGCUGUGGu--------------GGUG-GCCGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 248746 0.66 0.85879
Target:  5'- aCACCGACGCUcuucaaCGCCGGUaccgucaacaaucAGCUGAg -3'
miRNA:   3'- -GUGGCUGUGGug----GUGGCCG-------------UCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 241509 0.7 0.65369
Target:  5'- uGCCGAaaucaCGCCGCCACCGuuGGCCa-- -3'
miRNA:   3'- gUGGCU-----GUGGUGGUGGCcgUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 241452 0.67 0.814111
Target:  5'- gCACCGuCGCCAagaauuCCGCCaGCuuGUCGACg -3'
miRNA:   3'- -GUGGCuGUGGU------GGUGGcCGu-CGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.