Results 41 - 60 of 133 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 241183 | 0.66 | 0.873288 |
Target: 5'- gACCGGucggUACCACCACaCGucguGUGGCCGAg -3' miRNA: 3'- gUGGCU----GUGGUGGUG-GC----CGUCGGCUg -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 241048 | 0.68 | 0.763689 |
Target: 5'- aACUGAacUACCACCACCGuCAuCCGGCu -3' miRNA: 3'- gUGGCU--GUGGUGGUGGCcGUcGGCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 240200 | 0.71 | 0.615965 |
Target: 5'- uGCCaGCAuCCGCCG-CGGCGGCCGGa -3' miRNA: 3'- gUGGcUGU-GGUGGUgGCCGUCGGCUg -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 237074 | 0.68 | 0.772382 |
Target: 5'- uCGCCGACGuCCGCCuugauACaucugaGGguGUCGACg -3' miRNA: 3'- -GUGGCUGU-GGUGG-----UGg-----CCguCGGCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 227315 | 1.09 | 0.00262 |
Target: 5'- cCACCGACACCACCACCGGCAGCCGACg -3' miRNA: 3'- -GUGGCUGUGGUGGUGGCCGUCGGCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 227214 | 0.68 | 0.763689 |
Target: 5'- aCAUCGGCGCa--CACCGGCAGguCgGACg -3' miRNA: 3'- -GUGGCUGUGgugGUGGCCGUC--GgCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 227165 | 0.88 | 0.065898 |
Target: 5'- cCACCGcCACCGCCACCGGCA-CCGGCa -3' miRNA: 3'- -GUGGCuGUGGUGGUGGCCGUcGGCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 227117 | 0.76 | 0.350872 |
Target: 5'- uCACCGcUACCACCACCGccGCuGCCGAg -3' miRNA: 3'- -GUGGCuGUGGUGGUGGC--CGuCGGCUg -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 226758 | 0.69 | 0.7097 |
Target: 5'- cCGCCcACACCACCccccuguCCGGCuugAGCaCGACc -3' miRNA: 3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 226632 | 0.68 | 0.784372 |
Target: 5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3' miRNA: 3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 226572 | 0.69 | 0.746013 |
Target: 5'- cCGCCcACGCCACCccccuguCCGGCuugAGCaCGACc -3' miRNA: 3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 226446 | 0.68 | 0.784372 |
Target: 5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3' miRNA: 3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 226386 | 0.69 | 0.7097 |
Target: 5'- cCGCCcACACCACCccccucuCCGGCuugAGCaCGACc -3' miRNA: 3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 226260 | 0.66 | 0.862313 |
Target: 5'- uUAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3' miRNA: 3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 226200 | 0.69 | 0.7097 |
Target: 5'- cCGCCcACACCACCccccucuCCGGCuugAGCaCGACc -3' miRNA: 3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 226074 | 0.68 | 0.784372 |
Target: 5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugaguAGCCGuCu -3' miRNA: 3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 226014 | 0.69 | 0.746013 |
Target: 5'- cCGCCcACGCCACCccccuguCCGGCuccAGCuCGACc -3' miRNA: 3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 225419 | 0.66 | 0.892587 |
Target: 5'- -uCCGGCugCAgCC-CCaGCuGCCGGCa -3' miRNA: 3'- guGGCUGugGU-GGuGGcCGuCGGCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 225340 | 0.67 | 0.814111 |
Target: 5'- cCACCGccgcuguccccaACACCACCccccucuCCGGCuccAGCuCGACc -3' miRNA: 3'- -GUGGC------------UGUGGUGGu------GGCCG---UCG-GCUG- -5' |
|||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 225212 | 0.78 | 0.296694 |
Target: 5'- uGCCGGCGCCGCCGCguCGGCGGCucucCGAUc -3' miRNA: 3'- gUGGCUGUGGUGGUG--GCCGUCG----GCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home