Results 61 - 80 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 224855 | 0.77 | 0.329762 |
Target: 5'- cCGCCGACGCgGCggCGCCGGCAcgGUCGGCa -3' miRNA: 3'- -GUGGCUGUGgUG--GUGGCCGU--CGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 224750 | 0.69 | 0.7097 |
Target: 5'- gCAUCGGCAUCGgCAUCGGCA-UCGGCa -3' miRNA: 3'- -GUGGCUGUGGUgGUGGCCGUcGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 224690 | 0.69 | 0.71888 |
Target: 5'- cCAUCGcCACCACCACCaGCAcuGCCa-- -3' miRNA: 3'- -GUGGCuGUGGUGGUGGcCGU--CGGcug -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 224630 | 0.69 | 0.7097 |
Target: 5'- gCAUCGGCAUCGgCAUCGGCA-UCGGCa -3' miRNA: 3'- -GUGGCUGUGGUgGUGGCCGUcGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 224546 | 0.71 | 0.597141 |
Target: 5'- cCACCGcCACCGCCACCaGCAcuGCCc-- -3' miRNA: 3'- -GUGGCuGUGGUGGUGGcCGU--CGGcug -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 224520 | 0.66 | 0.886343 |
Target: 5'- -cCCGcCACCGCCACCGcCAGCg--- -3' miRNA: 3'- guGGCuGUGGUGGUGGCcGUCGgcug -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 224151 | 0.68 | 0.772382 |
Target: 5'- gCGCUGGCGCUGgCGCUGGCGG-UGGCg -3' miRNA: 3'- -GUGGCUGUGGUgGUGGCCGUCgGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 214765 | 0.66 | 0.859498 |
Target: 5'- --gCGACuCCACCACCGGCgcaAGUgCGAg -3' miRNA: 3'- gugGCUGuGGUGGUGGCCG---UCG-GCUg -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 212719 | 0.69 | 0.746013 |
Target: 5'- gACCaaGACuGCCACCACCG-CuGUCGACg -3' miRNA: 3'- gUGG--CUG-UGGUGGUGGCcGuCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 210341 | 0.74 | 0.447847 |
Target: 5'- cCACCGGCACCacgggcaccaucugcACCACCGGCAccaCgGGCa -3' miRNA: 3'- -GUGGCUGUGG---------------UGGUGGCCGUc--GgCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 210290 | 0.66 | 0.892587 |
Target: 5'- gCACCacCGCCACCACgGGCAccacuGCCa-- -3' miRNA: 3'- -GUGGcuGUGGUGGUGgCCGU-----CGGcug -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 208351 | 0.68 | 0.780969 |
Target: 5'- -cCCGACGCCAUC-CCGGaAGuCCGAg -3' miRNA: 3'- guGGCUGUGGUGGuGGCCgUC-GGCUg -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 200606 | 0.66 | 0.898636 |
Target: 5'- aCAUUGAgCACCGCaagaGCCGcGCGGUCGuCg -3' miRNA: 3'- -GUGGCU-GUGGUGg---UGGC-CGUCGGCuG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 184448 | 0.7 | 0.671553 |
Target: 5'- cCACgCGACcccgucgugaccuACCGCCGCCuGCAGCUGGa -3' miRNA: 3'- -GUG-GCUG-------------UGGUGGUGGcCGUCGGCUg -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 174734 | 0.67 | 0.85234 |
Target: 5'- cCGCCGGaacCGCCggaACCGCCGGaaccGCCGGa -3' miRNA: 3'- -GUGGCU---GUGG---UGGUGGCCgu--CGGCUg -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 169780 | 0.66 | 0.866483 |
Target: 5'- --aCGAUGCCGCCagguccACCGuGUcguGGCCGACg -3' miRNA: 3'- gugGCUGUGGUGG------UGGC-CG---UCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 165581 | 0.66 | 0.873288 |
Target: 5'- -gUCGACACCgaggucugggACCAUCGGCaggggGGCCGuACc -3' miRNA: 3'- guGGCUGUGG----------UGGUGGCCG-----UCGGC-UG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 164292 | 0.84 | 0.115708 |
Target: 5'- gCAUCGGCACCGgCACCGGCAuGUCGACa -3' miRNA: 3'- -GUGGCUGUGGUgGUGGCCGU-CGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 161233 | 0.67 | 0.829867 |
Target: 5'- uCACCGugGCCGaaGCCGaGUAGUCG-Cu -3' miRNA: 3'- -GUGGCugUGGUggUGGC-CGUCGGCuG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 159948 | 0.7 | 0.65369 |
Target: 5'- aGCCGGgGCgGCCAa-GGCAGCCGcCg -3' miRNA: 3'- gUGGCUgUGgUGGUggCCGUCGGCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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