miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 164292 0.84 0.115708
Target:  5'- gCAUCGGCACCGgCACCGGCAuGUCGACa -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGU-CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 296984 0.7 0.681852
Target:  5'- cCGCCGACACCAUCGCgcgcguccuCGGUGG-CGAUg -3'
miRNA:   3'- -GUGGCUGUGGUGGUG---------GCCGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 81200 0.69 0.7097
Target:  5'- gGCCucgGGCACCGCUacGCCGGCAaCgGACg -3'
miRNA:   3'- gUGG---CUGUGGUGG--UGGCCGUcGgCUG- -5'
10385 5' -60.6 NC_002687.1 + 252344 0.66 0.898636
Target:  5'- uGCCGAgGaCGCCGCgCGaCGGCCGAUc -3'
miRNA:   3'- gUGGCUgUgGUGGUG-GCcGUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 224855 0.77 0.329762
Target:  5'- cCGCCGACGCgGCggCGCCGGCAcgGUCGGCa -3'
miRNA:   3'- -GUGGCUGUGgUG--GUGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 315673 0.76 0.353758
Target:  5'- cCACCGGCACCaucggcaccaucggcACCACCGcCAGCCGcACc -3'
miRNA:   3'- -GUGGCUGUGG---------------UGGUGGCcGUCGGC-UG- -5'
10385 5' -60.6 NC_002687.1 + 307283 0.74 0.452909
Target:  5'- uGCCaGCACCACCACCGccaccGCcGCCGAUc -3'
miRNA:   3'- gUGGcUGUGGUGGUGGC-----CGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 158825 0.72 0.563505
Target:  5'- cCGCCGuCGCCGCCggucgaaagcccggaGgCGGCGGCCGuCg -3'
miRNA:   3'- -GUGGCuGUGGUGG---------------UgGCCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 292435 0.71 0.638606
Target:  5'- gCGCCGcgGCCGCCACCgcuuccaguuggcgaGGCGGCCG-Cu -3'
miRNA:   3'- -GUGGCugUGGUGGUGG---------------CCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 5917 0.7 0.672491
Target:  5'- aGCCGugAagACgCAUUGGCGGCCGAUa -3'
miRNA:   3'- gUGGCugUggUG-GUGGCCGUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 159948 0.7 0.65369
Target:  5'- aGCCGGgGCgGCCAa-GGCAGCCGcCg -3'
miRNA:   3'- gUGGCUgUGgUGGUggCCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 307361 0.71 0.634832
Target:  5'- uGCCGuCACCAUCGCuguCGGCGccucGCCGAUg -3'
miRNA:   3'- gUGGCuGUGGUGGUG---GCCGU----CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 97805 0.8 0.20354
Target:  5'- cCACCGGCACCaucggcACCGCUGGCAcuGCUGGCa -3'
miRNA:   3'- -GUGGCUGUGG------UGGUGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 241509 0.7 0.65369
Target:  5'- uGCCGAaaucaCGCCGCCACCGuuGGCCa-- -3'
miRNA:   3'- gUGGCU-----GUGGUGGUGGCcgUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 23714 0.79 0.233132
Target:  5'- cCGCCGACGCC-CCuCCGGCAucGCUGGCg -3'
miRNA:   3'- -GUGGCUGUGGuGGuGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 106638 0.72 0.569081
Target:  5'- gCACCGACACCAuguCCACUcGCgGGUCGAUg -3'
miRNA:   3'- -GUGGCUGUGGU---GGUGGcCG-UCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 77741 0.7 0.672491
Target:  5'- uGCCguuucaGACGCCGCCGCCa-CGGCCGAa -3'
miRNA:   3'- gUGG------CUGUGGUGGUGGccGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 39238 0.7 0.700464
Target:  5'- aACCG-CGCUGgaACUGGCAGCCGAa -3'
miRNA:   3'- gUGGCuGUGGUggUGGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 89589 0.77 0.309603
Target:  5'- uGCCGACuCCGCCAgCGGCAGagaUGACg -3'
miRNA:   3'- gUGGCUGuGGUGGUgGCCGUCg--GCUG- -5'
10385 5' -60.6 NC_002687.1 + 47772 0.74 0.444489
Target:  5'- gGCCGGCACaccugCGCCACCGGaggcugucccccCAGUCGGCa -3'
miRNA:   3'- gUGGCUGUG-----GUGGUGGCC------------GUCGGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.