miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 103005 0.69 0.737944
Target:  5'- gCGCCGACACCaagGCCGCCaaggccacgaaggcuGCAGCCa-- -3'
miRNA:   3'- -GUGGCUGUGG---UGGUGGc--------------CGUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 81200 0.69 0.7097
Target:  5'- gGCCucgGGCACCGCUacGCCGGCAaCgGACg -3'
miRNA:   3'- gUGG---CUGUGGUGG--UGGCCGUcGgCUG- -5'
10385 5' -60.6 NC_002687.1 + 307361 0.71 0.634832
Target:  5'- uGCCGuCACCAUCGCuguCGGCGccucGCCGAUg -3'
miRNA:   3'- gUGGCuGUGGUGGUG---GCCGU----CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 89589 0.77 0.309603
Target:  5'- uGCCGACuCCGCCAgCGGCAGagaUGACg -3'
miRNA:   3'- gUGGCUGuGGUGGUgGCCGUCg--GCUG- -5'
10385 5' -60.6 NC_002687.1 + 241452 0.67 0.814111
Target:  5'- gCACCGuCGCCAagaauuCCGCCaGCuuGUCGACg -3'
miRNA:   3'- -GUGGCuGUGGU------GGUGGcCGu-CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 224151 0.68 0.772382
Target:  5'- gCGCUGGCGCUGgCGCUGGCGG-UGGCg -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 296984 0.7 0.681852
Target:  5'- cCGCCGACACCAUCGCgcgcguccuCGGUGG-CGAUg -3'
miRNA:   3'- -GUGGCUGUGGUGGUG---------GCCGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 23714 0.79 0.233132
Target:  5'- cCGCCGACGCC-CCuCCGGCAucGCUGGCg -3'
miRNA:   3'- -GUGGCUGUGGuGGuGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 241048 0.68 0.763689
Target:  5'- aACUGAacUACCACCACCGuCAuCCGGCu -3'
miRNA:   3'- gUGGCU--GUGGUGGUGGCcGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 97805 0.8 0.20354
Target:  5'- cCACCGGCACCaucggcACCGCUGGCAcuGCUGGCa -3'
miRNA:   3'- -GUGGCUGUGG------UGGUGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 39238 0.7 0.700464
Target:  5'- aACCG-CGCUGgaACUGGCAGCCGAa -3'
miRNA:   3'- gUGGCuGUGGUggUGGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 7235 0.69 0.746013
Target:  5'- uCGCUGGugUCACCACUGGCA-CCGGCu -3'
miRNA:   3'- -GUGGCUguGGUGGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 241509 0.7 0.65369
Target:  5'- uGCCGAaaucaCGCCGCCACCGuuGGCCa-- -3'
miRNA:   3'- gUGGCU-----GUGGUGGUGGCcgUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 292435 0.71 0.638606
Target:  5'- gCGCCGcgGCCGCCACCgcuuccaguuggcgaGGCGGCCG-Cu -3'
miRNA:   3'- -GUGGCugUGGUGGUGG---------------CCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 307283 0.74 0.452909
Target:  5'- uGCCaGCACCACCACCGccaccGCcGCCGAUc -3'
miRNA:   3'- gUGGcUGUGGUGGUGGC-----CGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 224855 0.77 0.329762
Target:  5'- cCGCCGACGCgGCggCGCCGGCAcgGUCGGCa -3'
miRNA:   3'- -GUGGCUGUGgUG--GUGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 103091 0.67 0.829867
Target:  5'- -gUCGACGCCGggaaCAacgCGGguGCCGACg -3'
miRNA:   3'- guGGCUGUGGUg---GUg--GCCguCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 90665 0.67 0.821274
Target:  5'- uGuuGACACCacucgcgacgucgACCACuuugcaCGGCAGCCGGu -3'
miRNA:   3'- gUggCUGUGG-------------UGGUG------GCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 315928 0.68 0.789442
Target:  5'- cCACCGcCAUCAUgACCGGaucCCGACa -3'
miRNA:   3'- -GUGGCuGUGGUGgUGGCCgucGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 237074 0.68 0.772382
Target:  5'- uCGCCGACGuCCGCCuugauACaucugaGGguGUCGACg -3'
miRNA:   3'- -GUGGCUGU-GGUGG-----UGg-----CCguCGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.