miRNA display CGI


Results 61 - 80 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 60489 0.69 0.737044
Target:  5'- aAUCGGCGCacgCAUCGCCaGCuGGCCGACa -3'
miRNA:   3'- gUGGCUGUG---GUGGUGGcCG-UCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 297365 0.67 0.811698
Target:  5'- gCACagcgaGACAUCGCCACCGaggacgcgcgcgauGguGUCGGCg -3'
miRNA:   3'- -GUGg----CUGUGGUGGUGGC--------------CguCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 159198 0.68 0.797795
Target:  5'- gGCCGcCGCCuCCgggcuuucgACCGGCGGCgaCGGCg -3'
miRNA:   3'- gUGGCuGUGGuGG---------UGGCCGUCG--GCUG- -5'
10385 5' -60.6 NC_002687.1 + 224520 0.66 0.886343
Target:  5'- -cCCGcCACCGCCACCGcCAGCg--- -3'
miRNA:   3'- guGGCuGUGGUGGUGGCcGUCGgcug -5'
10385 5' -60.6 NC_002687.1 + 226074 0.68 0.784372
Target:  5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugaguAGCCGuCu -3'
miRNA:   3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 240200 0.71 0.615965
Target:  5'- uGCCaGCAuCCGCCG-CGGCGGCCGGa -3'
miRNA:   3'- gUGGcUGU-GGUGGUgGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 226446 0.68 0.784372
Target:  5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3'
miRNA:   3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 59406 0.68 0.789442
Target:  5'- uCGCuCGACAUCGUCGugUCGGCGGCUGGCc -3'
miRNA:   3'- -GUG-GCUGUGGUGGU--GGCCGUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 332027 0.66 0.859498
Target:  5'- cCACCGACACCGaCACUGucGguGuCCGAg -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGC--CguC-GGCUg -5'
10385 5' -60.6 NC_002687.1 + 224750 0.69 0.7097
Target:  5'- gCAUCGGCAUCGgCAUCGGCA-UCGGCa -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 96496 0.7 0.691179
Target:  5'- -cUCGGCACCaACCGCaCGGgGGCCG-Cg -3'
miRNA:   3'- guGGCUGUGG-UGGUG-GCCgUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 279626 0.7 0.690248
Target:  5'- uGCCGGCACCACCugCugcucguGGUAG-UGGCg -3'
miRNA:   3'- gUGGCUGUGGUGGugG-------CCGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 283269 0.7 0.672491
Target:  5'- -uCCGACACCcCCGCCucGGCAuCUGGCg -3'
miRNA:   3'- guGGCUGUGGuGGUGG--CCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 184448 0.7 0.671553
Target:  5'- cCACgCGACcccgucgugaccuACCGCCGCCuGCAGCUGGa -3'
miRNA:   3'- -GUG-GCUG-------------UGGUGGUGGcCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 3631 0.71 0.625396
Target:  5'- aCACCGcacuACACUucGCCAUCGGUGGUCGAa -3'
miRNA:   3'- -GUGGC----UGUGG--UGGUGGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 224546 0.71 0.597141
Target:  5'- cCACCGcCACCGCCACCaGCAcuGCCc-- -3'
miRNA:   3'- -GUGGCuGUGGUGGUGGcCGU--CGGcug -5'
10385 5' -60.6 NC_002687.1 + 78068 0.72 0.578403
Target:  5'- aACCcGCACCAUCAUucgCGGCGGCCG-Ca -3'
miRNA:   3'- gUGGcUGUGGUGGUG---GCCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 210341 0.74 0.447847
Target:  5'- cCACCGGCACCacgggcaccaucugcACCACCGGCAccaCgGGCa -3'
miRNA:   3'- -GUGGCUGUGG---------------UGGUGGCCGUc--GgCUG- -5'
10385 5' -60.6 NC_002687.1 + 281319 0.75 0.411716
Target:  5'- cCGCCGcUGCCGCCACCcaGGCccccGCCGACg -3'
miRNA:   3'- -GUGGCuGUGGUGGUGG--CCGu---CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 214765 0.66 0.859498
Target:  5'- --gCGACuCCACCACCGGCgcaAGUgCGAg -3'
miRNA:   3'- gugGCUGuGGUGGUGGCCG---UCG-GCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.