miRNA display CGI


Results 81 - 100 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 41871 0.66 0.886343
Target:  5'- aCAUCGACACgGCUugCGGCu-CgGGCu -3'
miRNA:   3'- -GUGGCUGUGgUGGugGCCGucGgCUG- -5'
10385 5' -60.6 NC_002687.1 + 41688 0.69 0.746013
Target:  5'- aCAUCGACACgGCUugCGGCucgcgcuucuCCGGCa -3'
miRNA:   3'- -GUGGCUGUGgUGGugGCCGuc--------GGCUG- -5'
10385 5' -60.6 NC_002687.1 + 212719 0.69 0.746013
Target:  5'- gACCaaGACuGCCACCACCG-CuGUCGACg -3'
miRNA:   3'- gUGG--CUG-UGGUGGUGGCcGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 87789 0.72 0.559796
Target:  5'- gCACCGguuGCACCGgCAuCUGGUAGCCGGg -3'
miRNA:   3'- -GUGGC---UGUGGUgGU-GGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 78068 0.72 0.578403
Target:  5'- aACCcGCACCAUCAUucgCGGCGGCCG-Ca -3'
miRNA:   3'- gUGGcUGUGGUGGUG---GCCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 224546 0.71 0.597141
Target:  5'- cCACCGcCACCGCCACCaGCAcuGCCc-- -3'
miRNA:   3'- -GUGGCuGUGGUGGUGGcCGU--CGGcug -5'
10385 5' -60.6 NC_002687.1 + 240200 0.71 0.615965
Target:  5'- uGCCaGCAuCCGCCG-CGGCGGCCGGa -3'
miRNA:   3'- gUGGcUGU-GGUGGUgGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 3631 0.71 0.625396
Target:  5'- aCACCGcacuACACUucGCCAUCGGUGGUCGAa -3'
miRNA:   3'- -GUGGC----UGUGG--UGGUGGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 184448 0.7 0.671553
Target:  5'- cCACgCGACcccgucgugaccuACCGCCGCCuGCAGCUGGa -3'
miRNA:   3'- -GUG-GCUG-------------UGGUGGUGGcCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 283269 0.7 0.672491
Target:  5'- -uCCGACACCcCCGCCucGGCAuCUGGCg -3'
miRNA:   3'- guGGCUGUGGuGGUGG--CCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 279626 0.7 0.690248
Target:  5'- uGCCGGCACCACCugCugcucguGGUAG-UGGCg -3'
miRNA:   3'- gUGGCUGUGGUGGugG-------CCGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 96496 0.7 0.691179
Target:  5'- -cUCGGCACCaACCGCaCGGgGGCCG-Cg -3'
miRNA:   3'- guGGCUGUGG-UGGUG-GCCgUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 224750 0.69 0.7097
Target:  5'- gCAUCGGCAUCGgCAUCGGCA-UCGGCa -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 224630 0.69 0.7097
Target:  5'- gCAUCGGCAUCGgCAUCGGCA-UCGGCa -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 226758 0.69 0.7097
Target:  5'- cCGCCcACACCACCccccuguCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 226386 0.69 0.7097
Target:  5'- cCGCCcACACCACCccccucuCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 226200 0.69 0.7097
Target:  5'- cCGCCcACACCACCccccucuCCGGCuugAGCaCGACc -3'
miRNA:   3'- -GUGGcUGUGGUGGu------GGCCG---UCG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 131498 0.69 0.713379
Target:  5'- gGCCGAUGgCGuuACCGGCGugguggaauauagcuGCCGACa -3'
miRNA:   3'- gUGGCUGUgGUggUGGCCGU---------------CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 224690 0.69 0.71888
Target:  5'- cCAUCGcCACCACCACCaGCAcuGCCa-- -3'
miRNA:   3'- -GUGGCuGUGGUGGUGGcCGU--CGGcug -5'
10385 5' -60.6 NC_002687.1 + 291262 0.69 0.71888
Target:  5'- gGCCGACugCACUGCCgaagugagccagGGCAGCUa-- -3'
miRNA:   3'- gUGGCUGugGUGGUGG------------CCGUCGGcug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.