miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 3229 0.67 0.837518
Target:  5'- uGCCGACGaaggCGCCAUCGGCGcccucgagaccGCCG-Ca -3'
miRNA:   3'- gUGGCUGUg---GUGGUGGCCGU-----------CGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 226260 0.66 0.862313
Target:  5'- uUAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3'
miRNA:   3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 332027 0.66 0.859498
Target:  5'- cCACCGACACCGaCACUGucGguGuCCGAg -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGC--CguC-GGCUg -5'
10385 5' -60.6 NC_002687.1 + 214765 0.66 0.859498
Target:  5'- --gCGACuCCACCACCGGCgcaAGUgCGAg -3'
miRNA:   3'- gugGCUGuGGUGGUGGCCG---UCG-GCUg -5'
10385 5' -60.6 NC_002687.1 + 282306 0.67 0.85234
Target:  5'- -cCCGGCACCGCC-CCuGCuccuGCCG-Cg -3'
miRNA:   3'- guGGCUGUGGUGGuGGcCGu---CGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 57233 0.67 0.845011
Target:  5'- aACCGGCGCCGCgggcaUACaCGcGCAGgCGAUg -3'
miRNA:   3'- gUGGCUGUGGUG-----GUG-GC-CGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 70341 0.67 0.845011
Target:  5'- gACCGccagaGCCGCCAgCGGCAuGUaCGACa -3'
miRNA:   3'- gUGGCug---UGGUGGUgGCCGU-CG-GCUG- -5'
10385 5' -60.6 NC_002687.1 + 101593 0.67 0.845011
Target:  5'- cCACCGugAgCGCCgaagACCGcgccaaguacGCGGCCGAa -3'
miRNA:   3'- -GUGGCugUgGUGG----UGGC----------CGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 89956 0.67 0.837518
Target:  5'- uCAUCGuCAUCucuGCCGCUGGCggAGUCGGCa -3'
miRNA:   3'- -GUGGCuGUGG---UGGUGGCCG--UCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 279093 0.66 0.873288
Target:  5'- cUACCaGGCGCUcCC-CCGGCAccaCCGACa -3'
miRNA:   3'- -GUGG-CUGUGGuGGuGGCCGUc--GGCUG- -5'
10385 5' -60.6 NC_002687.1 + 284972 0.66 0.873288
Target:  5'- -gUCGACAgCAU--UCGGCAGCCGAa -3'
miRNA:   3'- guGGCUGUgGUGguGGCCGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 241183 0.66 0.873288
Target:  5'- gACCGGucggUACCACCACaCGucguGUGGCCGAg -3'
miRNA:   3'- gUGGCU----GUGGUGGUG-GC----CGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 40077 0.66 0.898636
Target:  5'- uGCUGAUGCguuGgCACCGGCuucgagaaggguAGCCGACa -3'
miRNA:   3'- gUGGCUGUGg--UgGUGGCCG------------UCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 13319 0.66 0.89804
Target:  5'- uGCCGGCGCUGCUgugAUCGGCuGCgcuccugCGACg -3'
miRNA:   3'- gUGGCUGUGGUGG---UGGCCGuCG-------GCUG- -5'
10385 5' -60.6 NC_002687.1 + 225419 0.66 0.892587
Target:  5'- -uCCGGCugCAgCC-CCaGCuGCCGGCa -3'
miRNA:   3'- guGGCUGugGU-GGuGGcCGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 210290 0.66 0.892587
Target:  5'- gCACCacCGCCACCACgGGCAccacuGCCa-- -3'
miRNA:   3'- -GUGGcuGUGGUGGUGgCCGU-----CGGcug -5'
10385 5' -60.6 NC_002687.1 + 41871 0.66 0.886343
Target:  5'- aCAUCGACACgGCUugCGGCu-CgGGCu -3'
miRNA:   3'- -GUGGCUGUGgUGGugGCCGucGgCUG- -5'
10385 5' -60.6 NC_002687.1 + 224520 0.66 0.886343
Target:  5'- -cCCGcCACCGCCACCGcCAGCg--- -3'
miRNA:   3'- guGGCuGUGGUGGUGGCcGUCGgcug -5'
10385 5' -60.6 NC_002687.1 + 72203 0.66 0.886343
Target:  5'- uUACCGAC-UgGCCAggcCCGGCGgauGCCGAa -3'
miRNA:   3'- -GUGGCUGuGgUGGU---GGCCGU---CGGCUg -5'
10385 5' -60.6 NC_002687.1 + 125502 0.66 0.879909
Target:  5'- uCAUCGACACgGacuCCGCCGGCucuuGCCc-- -3'
miRNA:   3'- -GUGGCUGUGgU---GGUGGCCGu---CGGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.