Results 41 - 60 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 41871 | 0.66 | 0.886343 |
Target: 5'- aCAUCGACACgGCUugCGGCu-CgGGCu -3' miRNA: 3'- -GUGGCUGUGgUGGugGCCGucGgCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 210290 | 0.66 | 0.892587 |
Target: 5'- gCACCacCGCCACCACgGGCAccacuGCCa-- -3' miRNA: 3'- -GUGGcuGUGGUGGUGgCCGU-----CGGcug -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 225419 | 0.66 | 0.892587 |
Target: 5'- -uCCGGCugCAgCC-CCaGCuGCCGGCa -3' miRNA: 3'- guGGCUGugGU-GGuGGcCGuCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 13319 | 0.66 | 0.89804 |
Target: 5'- uGCCGGCGCUGCUgugAUCGGCuGCgcuccugCGACg -3' miRNA: 3'- gUGGCUGUGGUGG---UGGCCGuCG-------GCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 40077 | 0.66 | 0.898636 |
Target: 5'- uGCUGAUGCguuGgCACCGGCuucgagaaggguAGCCGACa -3' miRNA: 3'- gUGGCUGUGg--UgGUGGCCG------------UCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 214765 | 0.66 | 0.859498 |
Target: 5'- --gCGACuCCACCACCGGCgcaAGUgCGAg -3' miRNA: 3'- gugGCUGuGGUGGUGGCCG---UCG-GCUg -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 282306 | 0.67 | 0.85234 |
Target: 5'- -cCCGGCACCGCC-CCuGCuccuGCCG-Cg -3' miRNA: 3'- guGGCUGUGGUGGuGGcCGu---CGGCuG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 59406 | 0.68 | 0.789442 |
Target: 5'- uCGCuCGACAUCGUCGugUCGGCGGCUGGCc -3' miRNA: 3'- -GUG-GCUGUGGUGGU--GGCCGUCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 159198 | 0.68 | 0.797795 |
Target: 5'- gGCCGcCGCCuCCgggcuuucgACCGGCGGCgaCGGCg -3' miRNA: 3'- gUGGCuGUGGuGG---------UGGCCGUCG--GCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 297365 | 0.67 | 0.811698 |
Target: 5'- gCACagcgaGACAUCGCCACCGaggacgcgcgcgauGguGUCGGCg -3' miRNA: 3'- -GUGg----CUGUGGUGGUGGC--------------CguCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 278881 | 0.67 | 0.814111 |
Target: 5'- uCGCUGACACC-CUucgaauacCCGGCAGCCc-- -3' miRNA: 3'- -GUGGCUGUGGuGGu-------GGCCGUCGGcug -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 225340 | 0.67 | 0.814111 |
Target: 5'- cCACCGccgcuguccccaACACCACCccccucuCCGGCuccAGCuCGACc -3' miRNA: 3'- -GUGGC------------UGUGGUGGu------GGCCG---UCG-GCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 109424 | 0.67 | 0.820484 |
Target: 5'- gCGCCGAacuuguacgaCGCCAUCGGCGucagcGCCGAUg -3' miRNA: 3'- -GUGGCUgug-------GUGGUGGCCGU-----CGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 161233 | 0.67 | 0.829867 |
Target: 5'- uCACCGugGCCGaaGCCGaGUAGUCG-Cu -3' miRNA: 3'- -GUGGCugUGGUggUGGC-CGUCGGCuG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 279528 | 0.67 | 0.829867 |
Target: 5'- -uCCGGCACCGCCGCUGcGCAcGCg--- -3' miRNA: 3'- guGGCUGUGGUGGUGGC-CGU-CGgcug -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 3229 | 0.67 | 0.837518 |
Target: 5'- uGCCGACGaaggCGCCAUCGGCGcccucgagaccGCCG-Ca -3' miRNA: 3'- gUGGCUGUg---GUGGUGGCCGU-----------CGGCuG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 89956 | 0.67 | 0.837518 |
Target: 5'- uCAUCGuCAUCucuGCCGCUGGCggAGUCGGCa -3' miRNA: 3'- -GUGGCuGUGG---UGGUGGCCG--UCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 101593 | 0.67 | 0.845011 |
Target: 5'- cCACCGugAgCGCCgaagACCGcgccaaguacGCGGCCGAa -3' miRNA: 3'- -GUGGCugUgGUGG----UGGC----------CGUCGGCUg -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 70341 | 0.67 | 0.845011 |
Target: 5'- gACCGccagaGCCGCCAgCGGCAuGUaCGACa -3' miRNA: 3'- gUGGCug---UGGUGGUgGCCGU-CG-GCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 57233 | 0.67 | 0.845011 |
Target: 5'- aACCGGCGCCGCgggcaUACaCGcGCAGgCGAUg -3' miRNA: 3'- gUGGCUGUGGUG-----GUG-GC-CGUCgGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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