Results 61 - 80 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10385 | 5' | -60.6 | NC_002687.1 | + | 226446 | 0.68 | 0.784372 |
Target: 5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugcguAGCCGuCu -3' miRNA: 3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 226074 | 0.68 | 0.784372 |
Target: 5'- uCAUCGGCACCAacccccgCACCGGCuccagcugccugaguAGCCGuCu -3' miRNA: 3'- -GUGGCUGUGGUg------GUGGCCG---------------UCGGCuG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 59406 | 0.68 | 0.789442 |
Target: 5'- uCGCuCGACAUCGUCGugUCGGCGGCUGGCc -3' miRNA: 3'- -GUG-GCUGUGGUGGU--GGCCGUCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 159198 | 0.68 | 0.797795 |
Target: 5'- gGCCGcCGCCuCCgggcuuucgACCGGCGGCgaCGGCg -3' miRNA: 3'- gUGGCuGUGGuGG---------UGGCCGUCG--GCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 297365 | 0.67 | 0.811698 |
Target: 5'- gCACagcgaGACAUCGCCACCGaggacgcgcgcgauGguGUCGGCg -3' miRNA: 3'- -GUGg----CUGUGGUGGUGGC--------------CguCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 89956 | 0.67 | 0.837518 |
Target: 5'- uCAUCGuCAUCucuGCCGCUGGCggAGUCGGCa -3' miRNA: 3'- -GUGGCuGUGG---UGGUGGCCG--UCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 3229 | 0.67 | 0.837518 |
Target: 5'- uGCCGACGaaggCGCCAUCGGCGcccucgagaccGCCG-Ca -3' miRNA: 3'- gUGGCUGUg---GUGGUGGCCGU-----------CGGCuG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 279528 | 0.67 | 0.829867 |
Target: 5'- -uCCGGCACCGCCGCUGcGCAcGCg--- -3' miRNA: 3'- guGGCUGUGGUGGUGGC-CGU-CGgcug -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 161233 | 0.67 | 0.829867 |
Target: 5'- uCACCGugGCCGaaGCCGaGUAGUCG-Cu -3' miRNA: 3'- -GUGGCugUGGUggUGGC-CGUCGGCuG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 109424 | 0.67 | 0.820484 |
Target: 5'- gCGCCGAacuuguacgaCGCCAUCGGCGucagcGCCGAUg -3' miRNA: 3'- -GUGGCUgug-------GUGGUGGCCGU-----CGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 225340 | 0.67 | 0.814111 |
Target: 5'- cCACCGccgcuguccccaACACCACCccccucuCCGGCuccAGCuCGACc -3' miRNA: 3'- -GUGGC------------UGUGGUGGu------GGCCG---UCG-GCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 278881 | 0.67 | 0.814111 |
Target: 5'- uCGCUGACACC-CUucgaauacCCGGCAGCCc-- -3' miRNA: 3'- -GUGGCUGUGGuGGu-------GGCCGUCGGcug -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 307283 | 0.74 | 0.452909 |
Target: 5'- uGCCaGCACCACCACCGccaccGCcGCCGAUc -3' miRNA: 3'- gUGGcUGUGGUGGUGGC-----CGuCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 47772 | 0.74 | 0.444489 |
Target: 5'- gGCCGGCACaccugCGCCACCGGaggcugucccccCAGUCGGCa -3' miRNA: 3'- gUGGCUGUG-----GUGGUGGCC------------GUCGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 315673 | 0.76 | 0.353758 |
Target: 5'- cCACCGGCACCaucggcaccaucggcACCACCGcCAGCCGcACc -3' miRNA: 3'- -GUGGCUGUGG---------------UGGUGGCcGUCGGC-UG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 224855 | 0.77 | 0.329762 |
Target: 5'- cCGCCGACGCgGCggCGCCGGCAcgGUCGGCa -3' miRNA: 3'- -GUGGCUGUGgUG--GUGGCCGU--CGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 89589 | 0.77 | 0.309603 |
Target: 5'- uGCCGACuCCGCCAgCGGCAGagaUGACg -3' miRNA: 3'- gUGGCUGuGGUGGUgGCCGUCg--GCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 23714 | 0.79 | 0.233132 |
Target: 5'- cCGCCGACGCC-CCuCCGGCAucGCUGGCg -3' miRNA: 3'- -GUGGCUGUGGuGGuGGCCGU--CGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 97805 | 0.8 | 0.20354 |
Target: 5'- cCACCGGCACCaucggcACCGCUGGCAcuGCUGGCa -3' miRNA: 3'- -GUGGCUGUGG------UGGUGGCCGU--CGGCUG- -5' |
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10385 | 5' | -60.6 | NC_002687.1 | + | 252344 | 0.66 | 0.898636 |
Target: 5'- uGCCGAgGaCGCCGCgCGaCGGCCGAUc -3' miRNA: 3'- gUGGCUgUgGUGGUG-GCcGUCGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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