miRNA display CGI


Results 81 - 100 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10385 5' -60.6 NC_002687.1 + 38504 0.68 0.763689
Target:  5'- -uCCGAUguGCCGCCACCGGU-GCCcucGAUa -3'
miRNA:   3'- guGGCUG--UGGUGGUGGCCGuCGG---CUG- -5'
10385 5' -60.6 NC_002687.1 + 227214 0.68 0.763689
Target:  5'- aCAUCGGCGCa--CACCGGCAGguCgGACg -3'
miRNA:   3'- -GUGGCUGUGgugGUGGCCGUC--GgCUG- -5'
10385 5' -60.6 NC_002687.1 + 241048 0.68 0.763689
Target:  5'- aACUGAacUACCACCACCGuCAuCCGGCu -3'
miRNA:   3'- gUGGCU--GUGGUGGUGGCcGUcGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 224151 0.68 0.772382
Target:  5'- gCGCUGGCGCUGgCGCUGGCGG-UGGCg -3'
miRNA:   3'- -GUGGCUGUGGUgGUGGCCGUCgGCUG- -5'
10385 5' -60.6 NC_002687.1 + 237074 0.68 0.772382
Target:  5'- uCGCCGACGuCCGCCuugauACaucugaGGguGUCGACg -3'
miRNA:   3'- -GUGGCUGU-GGUGG-----UGg-----CCguCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 77741 0.7 0.672491
Target:  5'- uGCCguuucaGACGCCGCCGCCa-CGGCCGAa -3'
miRNA:   3'- gUGG------CUGUGGUGGUGGccGUCGGCUg -5'
10385 5' -60.6 NC_002687.1 + 241509 0.7 0.65369
Target:  5'- uGCCGAaaucaCGCCGCCACCGuuGGCCa-- -3'
miRNA:   3'- gUGGCU-----GUGGUGGUGGCcgUCGGcug -5'
10385 5' -60.6 NC_002687.1 + 159948 0.7 0.65369
Target:  5'- aGCCGGgGCgGCCAa-GGCAGCCGcCg -3'
miRNA:   3'- gUGGCUgUGgUGGUggCCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 97805 0.8 0.20354
Target:  5'- cCACCGGCACCaucggcACCGCUGGCAcuGCUGGCa -3'
miRNA:   3'- -GUGGCUGUGG------UGGUGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 23714 0.79 0.233132
Target:  5'- cCGCCGACGCC-CCuCCGGCAucGCUGGCg -3'
miRNA:   3'- -GUGGCUGUGGuGGuGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 89589 0.77 0.309603
Target:  5'- uGCCGACuCCGCCAgCGGCAGagaUGACg -3'
miRNA:   3'- gUGGCUGuGGUGGUgGCCGUCg--GCUG- -5'
10385 5' -60.6 NC_002687.1 + 224855 0.77 0.329762
Target:  5'- cCGCCGACGCgGCggCGCCGGCAcgGUCGGCa -3'
miRNA:   3'- -GUGGCUGUGgUG--GUGGCCGU--CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 315673 0.76 0.353758
Target:  5'- cCACCGGCACCaucggcaccaucggcACCACCGcCAGCCGcACc -3'
miRNA:   3'- -GUGGCUGUGG---------------UGGUGGCcGUCGGC-UG- -5'
10385 5' -60.6 NC_002687.1 + 47772 0.74 0.444489
Target:  5'- gGCCGGCACaccugCGCCACCGGaggcugucccccCAGUCGGCa -3'
miRNA:   3'- gUGGCUGUG-----GUGGUGGCC------------GUCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 307283 0.74 0.452909
Target:  5'- uGCCaGCACCACCACCGccaccGCcGCCGAUc -3'
miRNA:   3'- gUGGcUGUGGUGGUGGC-----CGuCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 158825 0.72 0.563505
Target:  5'- cCGCCGuCGCCGCCggucgaaagcccggaGgCGGCGGCCGuCg -3'
miRNA:   3'- -GUGGCuGUGGUGG---------------UgGCCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 106638 0.72 0.569081
Target:  5'- gCACCGACACCAuguCCACUcGCgGGUCGAUg -3'
miRNA:   3'- -GUGGCUGUGGU---GGUGGcCG-UCGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 307361 0.71 0.634832
Target:  5'- uGCCGuCACCAUCGCuguCGGCGccucGCCGAUg -3'
miRNA:   3'- gUGGCuGUGGUGGUG---GCCGU----CGGCUG- -5'
10385 5' -60.6 NC_002687.1 + 292435 0.71 0.638606
Target:  5'- gCGCCGcgGCCGCCACCgcuuccaguuggcgaGGCGGCCG-Cu -3'
miRNA:   3'- -GUGGCugUGGUGGUGG---------------CCGUCGGCuG- -5'
10385 5' -60.6 NC_002687.1 + 130366 0.71 0.644265
Target:  5'- cCACCGccacCACCACCACCGcCAGCU-ACa -3'
miRNA:   3'- -GUGGCu---GUGGUGGUGGCcGUCGGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.