miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10386 3' -55.3 NC_002687.1 + 331978 0.66 0.984513
Target:  5'- -cGCUCAGgucaAGAGGAcGAGGaaGCUGUg -3'
miRNA:   3'- gaCGAGUC----UCUCCUcUUCCa-CGACGa -5'
10386 3' -55.3 NC_002687.1 + 32080 0.66 0.97627
Target:  5'- gUGCg-GGAGAGGGGAGGGUGa---- -3'
miRNA:   3'- gACGagUCUCUCCUCUUCCACgacga -5'
10386 3' -55.3 NC_002687.1 + 20608 0.66 0.973782
Target:  5'- uCUGaagaCGGGGAaguGGGGAAGGUGCgagcGCUg -3'
miRNA:   3'- -GACga--GUCUCU---CCUCUUCCACGa---CGA- -5'
10386 3' -55.3 NC_002687.1 + 313621 0.66 0.973782
Target:  5'- ---aUCAGGGAGGAGAGGaUGC-GCa -3'
miRNA:   3'- gacgAGUCUCUCCUCUUCcACGaCGa -5'
10386 3' -55.3 NC_002687.1 + 139231 0.67 0.969418
Target:  5'- -aGUUCAGGGAGuGGGAGaaguugaauagauguGGUGCUGaCa -3'
miRNA:   3'- gaCGAGUCUCUC-CUCUU---------------CCACGAC-Ga -5'
10386 3' -55.3 NC_002687.1 + 302866 0.69 0.922948
Target:  5'- uCUGCUgGcguuuGAGAGG-GAGGGgaaugGCUGCg -3'
miRNA:   3'- -GACGAgU-----CUCUCCuCUUCCa----CGACGa -5'
10386 3' -55.3 NC_002687.1 + 224967 0.7 0.893491
Target:  5'- -aGC-CGGAGAGGGGGGuGGUGUUGg- -3'
miRNA:   3'- gaCGaGUCUCUCCUCUU-CCACGACga -5'
10386 3' -55.3 NC_002687.1 + 310034 0.7 0.866041
Target:  5'- gCUGUagGGAGAGGAGuGGGUGUauccGCUg -3'
miRNA:   3'- -GACGagUCUCUCCUCuUCCACGa---CGA- -5'
10386 3' -55.3 NC_002687.1 + 225832 0.71 0.843358
Target:  5'- gUGCUCAagccgGAGAGGGGGGuGGUGUggGCg -3'
miRNA:   3'- gACGAGU-----CUCUCCUCUU-CCACGa-CGa -5'
10386 3' -55.3 NC_002687.1 + 258846 0.71 0.843358
Target:  5'- uCUGcCUUGGAcuGGAGAcGGUGCUGCg -3'
miRNA:   3'- -GAC-GAGUCUcuCCUCUuCCACGACGa -5'
10386 3' -55.3 NC_002687.1 + 226018 0.71 0.843358
Target:  5'- gUGCUCAagccgGAGAGGGGGGuGGUGUggGCg -3'
miRNA:   3'- gACGAGU-----CUCUCCUCUU-CCACGa-CGa -5'
10386 3' -55.3 NC_002687.1 + 225567 0.72 0.802032
Target:  5'- aCUGCUCGGgcagcuggggccGGAGcGGggGGUGgUGCUg -3'
miRNA:   3'- -GACGAGUC------------UCUCcUCuuCCACgACGA- -5'
10386 3' -55.3 NC_002687.1 + 309813 0.81 0.357942
Target:  5'- -aGCUCGG-GAGGAGggGGUGUUaGCUa -3'
miRNA:   3'- gaCGAGUCuCUCCUCuuCCACGA-CGA- -5'
10386 3' -55.3 NC_002687.1 + 227614 0.83 0.255248
Target:  5'- aCUGCUCAGAGggcagagGGGAGGAGGUGaUGCUg -3'
miRNA:   3'- -GACGAGUCUC-------UCCUCUUCCACgACGA- -5'
10386 3' -55.3 NC_002687.1 + 229915 0.98 0.034393
Target:  5'- aCUGCUCAaAGAGGAGAAGGUGCUGCUg -3'
miRNA:   3'- -GACGAGUcUCUCCUCUUCCACGACGA- -5'
10386 3' -55.3 NC_002687.1 + 230523 1.02 0.018139
Target:  5'- aCUGCUCAGAGuGGAGAAGGUGCUGCUg -3'
miRNA:   3'- -GACGAGUCUCuCCUCUUCCACGACGA- -5'
10386 3' -55.3 NC_002687.1 + 230643 1.02 0.018139
Target:  5'- aCUGCUCAGAGuGGAGAAGGUGCUGCUg -3'
miRNA:   3'- -GACGAGUCUCuCCUCUUCCACGACGA- -5'
10386 3' -55.3 NC_002687.1 + 229793 1.06 0.009788
Target:  5'- aUGCUCAGAGAGGAGAAGGUGCUGCUg -3'
miRNA:   3'- gACGAGUCUCUCCUCUUCCACGACGA- -5'
10386 3' -55.3 NC_002687.1 + 231128 1.09 0.006539
Target:  5'- aCUGCUCAGAGAGGAGAAGGUGCUGCUg -3'
miRNA:   3'- -GACGAGUCUCUCCUCUUCCACGACGA- -5'
10386 3' -55.3 NC_002687.1 + 230884 1.09 0.006539
Target:  5'- aCUGCUCAGAGAGGAGAAGGUGCUGCUg -3'
miRNA:   3'- -GACGAGUCUCUCCUCUUCCACGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.