miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10386 5' -54.9 NC_002687.1 + 51211 0.84 0.235017
Target:  5'- gUGAaCUGCACACCCUUUUGUCCCCc- -3'
miRNA:   3'- -ACUcGAUGUGUGGGGAAACAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 52736 0.84 0.235017
Target:  5'- gUGAGCUGCACACaUUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGgGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 52157 0.84 0.235017
Target:  5'- gUGAGCUGCACACaUUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGgGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 52801 0.85 0.203589
Target:  5'- gUGAGCUGCACACCCgUUUGUCCaCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGgAAACAGGgGAA- -5'
10386 5' -54.9 NC_002687.1 + 53248 0.86 0.189285
Target:  5'- gUGAGCUACACACCUUUUUGUCCuCCg- -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGG-GGaa -5'
10386 5' -54.9 NC_002687.1 + 53054 0.86 0.189285
Target:  5'- gUGAGCUGCACACCUUUUUGUCCuCCg- -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGG-GGaa -5'
10386 5' -54.9 NC_002687.1 + 54037 0.86 0.189285
Target:  5'- gUGAGCUGCACACCUUUUUGUCCuCCg- -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGG-GGaa -5'
10386 5' -54.9 NC_002687.1 + 54425 0.86 0.189285
Target:  5'- gUGAGCUACACACCUUUUUGUCCuCCg- -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGG-GGaa -5'
10386 5' -54.9 NC_002687.1 + 228414 0.86 0.189285
Target:  5'- gUGAGCUGCACACCUUUUUGUCCuCCg- -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGG-GGaa -5'
10386 5' -54.9 NC_002687.1 + 228932 0.86 0.189285
Target:  5'- gUGAGCUGCACACCUUUUUGUCCuCCg- -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGG-GGaa -5'
10386 5' -54.9 NC_002687.1 + 53377 0.86 0.189285
Target:  5'- gUGAGCUGCACACCUUUUUGUCCuCCg- -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGG-GGaa -5'
10386 5' -54.9 NC_002687.1 + 229126 0.87 0.159307
Target:  5'- gUGAGCUACACACCCUUUcGUCCUCUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAaCAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 53506 0.89 0.114795
Target:  5'- gUGAGCUACACACCUUUUUGUCCUCUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 54231 0.89 0.114795
Target:  5'- gUGAGCUACACACCUUUUUGUCCUCUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 54635 0.9 0.10362
Target:  5'- gUGAGCUACAaACCCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUgUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 53570 0.91 0.088762
Target:  5'- gUGAGCUGCACAUCUUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 51340 0.92 0.084276
Target:  5'- gUGAGCUACACACgCUUUUGUCCCCUUg -3'
miRNA:   3'- -ACUCGAUGUGUGgGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 53956 0.93 0.072079
Target:  5'- gUGAGCUGCACACCUUUUUGUCCCCa- -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 52368 0.93 0.072079
Target:  5'- gUGAGCUGCACACCUUUUUGUCCCCa- -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 52866 0.93 0.072079
Target:  5'- gUGAGCUGCACACCUUUUUGUCCCCa- -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.