miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10387 3' -51.2 NC_002687.1 + 59409 0.66 0.99974
Target:  5'- -cCGUcGCUCGAcaucGUCGUgUCGGCGGCu- -3'
miRNA:   3'- uuGCA-CGAGUU----CAGCA-AGCUGCUGcu -5'
10387 3' -51.2 NC_002687.1 + 245544 0.66 0.99974
Target:  5'- ---cUGCUCGAGUCuccUGAUGACGAc -3'
miRNA:   3'- uugcACGAGUUCAGcaaGCUGCUGCU- -5'
10387 3' -51.2 NC_002687.1 + 207655 0.66 0.99974
Target:  5'- -cCGUGCUCAAGUCGaaacUgGugGA-GAu -3'
miRNA:   3'- uuGCACGAGUUCAGCa---AgCugCUgCU- -5'
10387 3' -51.2 NC_002687.1 + 9487 0.66 0.99974
Target:  5'- gAGCGUGuCUCGcAGUUGUUUGucCGACa- -3'
miRNA:   3'- -UUGCAC-GAGU-UCAGCAAGCu-GCUGcu -5'
10387 3' -51.2 NC_002687.1 + 320371 0.66 0.99974
Target:  5'- ---cUGCUCGAGUCuccUGAUGACGAc -3'
miRNA:   3'- uugcACGAGUUCAGcaaGCUGCUGCU- -5'
10387 3' -51.2 NC_002687.1 + 328469 0.66 0.99974
Target:  5'- -cCGUGCacacccacuugUCGGGUCGUaUCG-UGACGAa -3'
miRNA:   3'- uuGCACG-----------AGUUCAGCA-AGCuGCUGCU- -5'
10387 3' -51.2 NC_002687.1 + 79906 0.66 0.999675
Target:  5'- cAACGUGaUCAAuGUCGUcggguccaaGACGACGGg -3'
miRNA:   3'- -UUGCACgAGUU-CAGCAag-------CUGCUGCU- -5'
10387 3' -51.2 NC_002687.1 + 231582 0.66 0.999597
Target:  5'- gAGCGUGCUUGGcGUCGUagGugGcaGCGGc -3'
miRNA:   3'- -UUGCACGAGUU-CAGCAagCugC--UGCU- -5'
10387 3' -51.2 NC_002687.1 + 262911 0.66 0.999597
Target:  5'- cGACGUGCUCAucucAGUCGUUCcagcuGGUGuauGCGAg -3'
miRNA:   3'- -UUGCACGAGU----UCAGCAAG-----CUGC---UGCU- -5'
10387 3' -51.2 NC_002687.1 + 73714 0.66 0.999503
Target:  5'- uGACaugGCgu-GGUUGUUCGACGGCGu -3'
miRNA:   3'- -UUGca-CGaguUCAGCAAGCUGCUGCu -5'
10387 3' -51.2 NC_002687.1 + 110783 0.66 0.99939
Target:  5'- --aGUGCguaGAuGUCGUgugugcugUCGACGACGGg -3'
miRNA:   3'- uugCACGag-UU-CAGCA--------AGCUGCUGCU- -5'
10387 3' -51.2 NC_002687.1 + 126413 0.66 0.99939
Target:  5'- -cCGgGCUCAAGaucagcgaggCGUUCGACG-CGAa -3'
miRNA:   3'- uuGCaCGAGUUCa---------GCAAGCUGCuGCU- -5'
10387 3' -51.2 NC_002687.1 + 200985 0.67 0.999044
Target:  5'- gGGCGUGUUUAGGUCGgucgUGAgguaucucugaguaCGGCGAu -3'
miRNA:   3'- -UUGCACGAGUUCAGCaa--GCU--------------GCUGCU- -5'
10387 3' -51.2 NC_002687.1 + 170649 0.67 0.99891
Target:  5'- --aGUGCUCAucgauGUCGaugUCGAUGuCGAu -3'
miRNA:   3'- uugCACGAGUu----CAGCa--AGCUGCuGCU- -5'
10387 3' -51.2 NC_002687.1 + 161181 0.67 0.99891
Target:  5'- cAUGUGCUCGAG-CGUgguauaauaGugGAUGAg -3'
miRNA:   3'- uUGCACGAGUUCaGCAag-------CugCUGCU- -5'
10387 3' -51.2 NC_002687.1 + 161769 0.67 0.99891
Target:  5'- cACGUGCuUCGAca-GUUcCGACGACGGc -3'
miRNA:   3'- uUGCACG-AGUUcagCAA-GCUGCUGCU- -5'
10387 3' -51.2 NC_002687.1 + 226202 0.68 0.996651
Target:  5'- -uCGUGCUCAAGcCGgacagggggguggCGugGGCGGc -3'
miRNA:   3'- uuGCACGAGUUCaGCaa-----------GCugCUGCU- -5'
10387 3' -51.2 NC_002687.1 + 75267 0.69 0.995196
Target:  5'- cGAgGUGCUCGAGUCcUUCGACa---- -3'
miRNA:   3'- -UUgCACGAGUUCAGcAAGCUGcugcu -5'
10387 3' -51.2 NC_002687.1 + 10206 0.7 0.987864
Target:  5'- gGACG-GCaUUGAGUCGUUCGGagaaGACGGc -3'
miRNA:   3'- -UUGCaCG-AGUUCAGCAAGCUg---CUGCU- -5'
10387 3' -51.2 NC_002687.1 + 202935 0.7 0.986336
Target:  5'- cGACGggGCUCu-GUCGUacagggucgUCGugGGCGAa -3'
miRNA:   3'- -UUGCa-CGAGuuCAGCA---------AGCugCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.