miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10387 5' -51.6 NC_002687.1 + 159212 0.66 0.999597
Target:  5'- -uUGGCCuuGUCGACGGCCgccGCcucCGGg -3'
miRNA:   3'- cuACCGG--UAGUUGCUGGacaUGu--GCC- -5'
10387 5' -51.6 NC_002687.1 + 182869 0.66 0.999597
Target:  5'- --aGGCC-UCGuacaGGCgUGUGCugGGa -3'
miRNA:   3'- cuaCCGGuAGUug--CUGgACAUGugCC- -5'
10387 5' -51.6 NC_002687.1 + 262659 0.66 0.999597
Target:  5'- --cGGCCAcCAacaacgacgucGCGGCCc-UGCACGGg -3'
miRNA:   3'- cuaCCGGUaGU-----------UGCUGGacAUGUGCC- -5'
10387 5' -51.6 NC_002687.1 + 99784 0.66 0.99958
Target:  5'- cAUGGCCcUC-AUGACCggcacccacgGCACGGa -3'
miRNA:   3'- cUACCGGuAGuUGCUGGaca-------UGUGCC- -5'
10387 5' -51.6 NC_002687.1 + 159574 0.66 0.999503
Target:  5'- cAUGGCUgacuUCGGCGACCUcagGCGCa- -3'
miRNA:   3'- cUACCGGu---AGUUGCUGGAca-UGUGcc -5'
10387 5' -51.6 NC_002687.1 + 239197 0.66 0.999503
Target:  5'- cAUGGCCAcCGaguACGACUUcGgccaACACGGg -3'
miRNA:   3'- cUACCGGUaGU---UGCUGGA-Ca---UGUGCC- -5'
10387 5' -51.6 NC_002687.1 + 304182 0.66 0.999391
Target:  5'- cGGUGGCCG-CGAUGACgUUGgu-GCGGg -3'
miRNA:   3'- -CUACCGGUaGUUGCUG-GACaugUGCC- -5'
10387 5' -51.6 NC_002687.1 + 315741 0.66 0.999391
Target:  5'- --aGGCUuuUCAGCGACCgGUugGCc- -3'
miRNA:   3'- cuaCCGGu-AGUUGCUGGaCAugUGcc -5'
10387 5' -51.6 NC_002687.1 + 295794 0.66 0.999391
Target:  5'- gGGUGGCCAUCucGCGcuuuuUCUGUcCAuCGGa -3'
miRNA:   3'- -CUACCGGUAGu-UGCu----GGACAuGU-GCC- -5'
10387 5' -51.6 NC_002687.1 + 264013 0.66 0.999391
Target:  5'- --aGcGCCAUgAGCGACgacaUGUACGCGc -3'
miRNA:   3'- cuaC-CGGUAgUUGCUGg---ACAUGUGCc -5'
10387 5' -51.6 NC_002687.1 + 167587 0.66 0.999272
Target:  5'- gGGUGGagaCGUCGACGACUcuguagUGgaagaacguuuuaagGCACGGg -3'
miRNA:   3'- -CUACCg--GUAGUUGCUGG------ACa--------------UGUGCC- -5'
10387 5' -51.6 NC_002687.1 + 56487 0.66 0.999258
Target:  5'- cGAUcGCCgcGUCAGCGACCaUGUGgGCa- -3'
miRNA:   3'- -CUAcCGG--UAGUUGCUGG-ACAUgUGcc -5'
10387 5' -51.6 NC_002687.1 + 28652 0.66 0.999258
Target:  5'- uGGUGGCCGcuUCGACcaGGCUgcacucgGUGgACGGg -3'
miRNA:   3'- -CUACCGGU--AGUUG--CUGGa------CAUgUGCC- -5'
10387 5' -51.6 NC_002687.1 + 154529 0.66 0.9991
Target:  5'- -uUGGCgCGUUggUGGCCaugGUgacGCGCGGa -3'
miRNA:   3'- cuACCG-GUAGuuGCUGGa--CA---UGUGCC- -5'
10387 5' -51.6 NC_002687.1 + 203177 0.67 0.998697
Target:  5'- --gGGCCGccggugCAuACGACCUGaGCACGu -3'
miRNA:   3'- cuaCCGGUa-----GU-UGCUGGACaUGUGCc -5'
10387 5' -51.6 NC_002687.1 + 80476 0.67 0.998697
Target:  5'- uGAUGGUCGUCGAU--CCUG-ACGCGc -3'
miRNA:   3'- -CUACCGGUAGUUGcuGGACaUGUGCc -5'
10387 5' -51.6 NC_002687.1 + 169804 0.67 0.998697
Target:  5'- cGUGGCCgacgccgacGUCGacACGGCUcaugaauggGUGCACGGg -3'
miRNA:   3'- cUACCGG---------UAGU--UGCUGGa--------CAUGUGCC- -5'
10387 5' -51.6 NC_002687.1 + 160887 0.67 0.998697
Target:  5'- --cGGCCAcggUGACaACCUGUcACAUGGg -3'
miRNA:   3'- cuaCCGGUa--GUUGcUGGACA-UGUGCC- -5'
10387 5' -51.6 NC_002687.1 + 141248 0.67 0.998674
Target:  5'- --cGGCCgcGUCGACGuCCUGaaguuuaUGCGCGa -3'
miRNA:   3'- cuaCCGG--UAGUUGCuGGAC-------AUGUGCc -5'
10387 5' -51.6 NC_002687.1 + 294939 0.67 0.998674
Target:  5'- uGGUGuuGCCGUucucgagCAACGccuGCCUGUAgGCGGa -3'
miRNA:   3'- -CUAC--CGGUA-------GUUGC---UGGACAUgUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.