miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10388 3' -52.5 NC_002687.1 + 2794 0.67 0.993266
Target:  5'- --cAUCCGUGUCuAUGACAccGGCGUc -3'
miRNA:   3'- uacUAGGCACGGuUGCUGUuaCCGUA- -5'
10388 3' -52.5 NC_002687.1 + 21692 0.69 0.977432
Target:  5'- -aGcgCaugGCCGAUGACAGUGGCGUu -3'
miRNA:   3'- uaCuaGgcaCGGUUGCUGUUACCGUA- -5'
10388 3' -52.5 NC_002687.1 + 48516 0.75 0.790533
Target:  5'- -aGAUCCGUGCCugUGAUGAUGuGCAc -3'
miRNA:   3'- uaCUAGGCACGGuuGCUGUUAC-CGUa -5'
10388 3' -52.5 NC_002687.1 + 65184 0.66 0.996795
Target:  5'- cUGGUaccgCUGUGUCAugGACAccGGCGa -3'
miRNA:   3'- uACUA----GGCACGGUugCUGUuaCCGUa -5'
10388 3' -52.5 NC_002687.1 + 76609 0.66 0.996251
Target:  5'- ----gCCGUGCCucgugcuaGACGGUGGCGg -3'
miRNA:   3'- uacuaGGCACGGuug-----CUGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 77730 0.73 0.850056
Target:  5'- cGUGGUCCGggcacaagGCCAAagaGGCGAUGGCc- -3'
miRNA:   3'- -UACUAGGCa-------CGGUUg--CUGUUACCGua -5'
10388 3' -52.5 NC_002687.1 + 90617 0.7 0.959682
Target:  5'- --cGUCCuUGCCGACGACGAUacucGGCGUu -3'
miRNA:   3'- uacUAGGcACGGUUGCUGUUA----CCGUA- -5'
10388 3' -52.5 NC_002687.1 + 90863 0.66 0.996795
Target:  5'- uAUGAUCgGUGCCaAGCG-UAcUGGCGc -3'
miRNA:   3'- -UACUAGgCACGG-UUGCuGUuACCGUa -5'
10388 3' -52.5 NC_002687.1 + 92877 0.67 0.992281
Target:  5'- -gGAUCCGUGUCAgucaGCGugGAUGuaGa -3'
miRNA:   3'- uaCUAGGCACGGU----UGCugUUACcgUa -5'
10388 3' -52.5 NC_002687.1 + 163282 0.73 0.857834
Target:  5'- -gGAUCCGUGUCGAaauCGugAAUGGUGUg -3'
miRNA:   3'- uaCUAGGCACGGUU---GCugUUACCGUA- -5'
10388 3' -52.5 NC_002687.1 + 170724 0.66 0.99486
Target:  5'- -cGGUUCGUGCCccgguucGugGGCcgGGUGGCAg -3'
miRNA:   3'- uaCUAGGCACGG-------UugCUG--UUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 174887 0.68 0.987146
Target:  5'- -cGAUCCaUGCaCAAgUGACAAUGGUAg -3'
miRNA:   3'- uaCUAGGcACG-GUU-GCUGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 182916 0.66 0.995633
Target:  5'- -cGcUCCGgcaugGCCGugGgACGGUGGCGa -3'
miRNA:   3'- uaCuAGGCa----CGGUugC-UGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 200110 0.67 0.989968
Target:  5'- --cGUUgGUGCCGGCGACGAcGGCc- -3'
miRNA:   3'- uacUAGgCACGGUUGCUGUUaCCGua -5'
10388 3' -52.5 NC_002687.1 + 224219 0.69 0.974971
Target:  5'- gGUGG-CgGUGgCGAUGGCGAUGGCGa -3'
miRNA:   3'- -UACUaGgCACgGUUGCUGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 224278 0.66 0.996795
Target:  5'- -cGAUgCCGaUGCCGAUGcUGAUGGCGa -3'
miRNA:   3'- uaCUA-GGC-ACGGUUGCuGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 224404 0.69 0.96947
Target:  5'- -cGAUgCCGaUGCCGauacugAUGGCGAUGGCAg -3'
miRNA:   3'- uaCUA-GGC-ACGGU------UGCUGUUACCGUa -5'
10388 3' -52.5 NC_002687.1 + 225724 0.7 0.963158
Target:  5'- -gGGUUgGUGCCGAUGACAacggggAUGGUAg -3'
miRNA:   3'- uaCUAGgCACGGUUGCUGU------UACCGUa -5'
10388 3' -52.5 NC_002687.1 + 226096 0.7 0.963158
Target:  5'- -gGGUUgGUGCCGAUGACAacggggAUGGUAg -3'
miRNA:   3'- uaCUAGgCACGGUUGCUGU------UACCGUa -5'
10388 3' -52.5 NC_002687.1 + 226282 0.7 0.963158
Target:  5'- -gGGUUgGUGCCGAUGACAacggggAUGGUAg -3'
miRNA:   3'- uaCUAGgCACGGUUGCUGU------UACCGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.