Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10388 | 5' | -61.8 | NC_002687.1 | + | 297340 | 0.66 | 0.869187 |
Target: 5'- aCGCGCGCgauGGUGUCGGcGGacugCUugCGg -3' miRNA: 3'- aGUGCGCG---UCGCAGCCaCCg---GGugGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 97754 | 0.66 | 0.839395 |
Target: 5'- -aGCGUugGCGGCGUggauguucucguugcUGGcaccgcuggcaccgcUGGCCCACCGg -3' miRNA: 3'- agUGCG--CGUCGCA---------------GCC---------------ACCGGGUGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 258269 | 0.66 | 0.833396 |
Target: 5'- gUCACGgacaGCGGCGUCGGUcuaagcgaGGCUgACg- -3' miRNA: 3'- -AGUGCg---CGUCGCAGCCA--------CCGGgUGgc -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 4438 | 0.66 | 0.862363 |
Target: 5'- gCACGCGCAGUG-CGGgcacagGGa--GCCGa -3' miRNA: 3'- aGUGCGCGUCGCaGCCa-----CCgggUGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 329770 | 0.66 | 0.869187 |
Target: 5'- aUCGCugcuGCGCcgaGGCGUgccCGGUGGCgUgGCCGg -3' miRNA: 3'- -AGUG----CGCG---UCGCA---GCCACCG-GgUGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 295379 | 0.66 | 0.832639 |
Target: 5'- aUCACcCGCgAGCuGUuugauacCGGUGGCCCGCg- -3' miRNA: 3'- -AGUGcGCG-UCG-CA-------GCCACCGGGUGgc -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 276145 | 0.66 | 0.833396 |
Target: 5'- gUCGCGC-CGGCGUCGaUGaGCCUGCg- -3' miRNA: 3'- -AGUGCGcGUCGCAGCcAC-CGGGUGgc -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 236938 | 0.66 | 0.840879 |
Target: 5'- aUCACGaUGCAcaaGUUGG-GGCCgACCGg -3' miRNA: 3'- -AGUGC-GCGUcg-CAGCCaCCGGgUGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 250876 | 0.66 | 0.862363 |
Target: 5'- gUCcCGCGUGGaGUCGGUGcaaUCCGCCGu -3' miRNA: 3'- -AGuGCGCGUCgCAGCCACc--GGGUGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 296995 | 0.67 | 0.810062 |
Target: 5'- aUCGCGCGCGuCcUCGGUGGCgaugucUCGCUGu -3' miRNA: 3'- -AGUGCGCGUcGcAGCCACCG------GGUGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 279267 | 0.67 | 0.802008 |
Target: 5'- cCACGaGCAGCaggUGGUgccggcaccaccGGCCCACCa -3' miRNA: 3'- aGUGCgCGUCGca-GCCA------------CCGGGUGGc -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 84618 | 0.67 | 0.785526 |
Target: 5'- gUCAguCGCGCuggacgugagAGCGaUGGUGGCCUGCuCGg -3' miRNA: 3'- -AGU--GCGCG----------UCGCaGCCACCGGGUG-GC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 123566 | 0.68 | 0.74244 |
Target: 5'- gUCGCGUGUGGCGaCGGUGucuuguauaCCCACUGc -3' miRNA: 3'- -AGUGCGCGUCGCaGCCACc--------GGGUGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 277505 | 0.68 | 0.759963 |
Target: 5'- cCGCGCGCuGCcucGUCGGcGG-CCAUCGg -3' miRNA: 3'- aGUGCGCGuCG---CAGCCaCCgGGUGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 224129 | 0.68 | 0.751245 |
Target: 5'- gCugGCGCuGGCGguggCGGUGGCgCUggcGCUGg -3' miRNA: 3'- aGugCGCG-UCGCa---GCCACCG-GG---UGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 298416 | 0.69 | 0.669712 |
Target: 5'- aCGCGCGCGGCGgCGGccgcGGCCUuAUCa -3' miRNA: 3'- aGUGCGCGUCGCaGCCa---CCGGG-UGGc -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 331674 | 0.69 | 0.68818 |
Target: 5'- aCA-GUGuCGGUGUCGGUGGCuCCACg- -3' miRNA: 3'- aGUgCGC-GUCGCAGCCACCG-GGUGgc -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 225208 | 0.7 | 0.660437 |
Target: 5'- -gGCGcCGCcGCGUCGGcGGCUCuCCGa -3' miRNA: 3'- agUGC-GCGuCGCAGCCaCCGGGuGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 57339 | 0.7 | 0.660437 |
Target: 5'- uUCGCGgGCGGUGUCcGUGcGCC-GCCGa -3' miRNA: 3'- -AGUGCgCGUCGCAGcCAC-CGGgUGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 311138 | 0.7 | 0.641837 |
Target: 5'- aCAUGCGCAcgaGUCGGgGGCaCCAUCGu -3' miRNA: 3'- aGUGCGCGUcg-CAGCCaCCG-GGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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