miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10388 5' -61.8 NC_002687.1 + 215264 0.7 0.651143
Target:  5'- -gGgGUGCAGCGggucaaUCGGUGGCuCCAUCu -3'
miRNA:   3'- agUgCGCGUCGC------AGCCACCG-GGUGGc -5'
10388 5' -61.8 NC_002687.1 + 311138 0.7 0.641837
Target:  5'- aCAUGCGCAcgaGUCGGgGGCaCCAUCGu -3'
miRNA:   3'- aGUGCGCGUcg-CAGCCaCCG-GGUGGC- -5'
10388 5' -61.8 NC_002687.1 + 267871 0.7 0.626936
Target:  5'- -gAUGCGCAG-GUCGGUgcucaggaggugcuuGGCCCGCUu -3'
miRNA:   3'- agUGCGCGUCgCAGCCA---------------CCGGGUGGc -5'
10388 5' -61.8 NC_002687.1 + 2373 0.71 0.586071
Target:  5'- gCACGauCGGUGUCGGUcGGCCaCGCCc -3'
miRNA:   3'- aGUGCgcGUCGCAGCCA-CCGG-GUGGc -5'
10388 5' -61.8 NC_002687.1 + 200587 0.71 0.586071
Target:  5'- --cCGCGCGGuCGUCGG-GGCCggaaucuuuggCACCGg -3'
miRNA:   3'- aguGCGCGUC-GCAGCCaCCGG-----------GUGGC- -5'
10388 5' -61.8 NC_002687.1 + 238671 0.72 0.5403
Target:  5'- cCAUGCGgAuCGuUCGGUGGgCCACCGa -3'
miRNA:   3'- aGUGCGCgUcGC-AGCCACCgGGUGGC- -5'
10388 5' -61.8 NC_002687.1 + 239046 1.09 0.002355
Target:  5'- uUCACGCGCAGCGUCGGUGGCCCACCGa -3'
miRNA:   3'- -AGUGCGCGUCGCAGCCACCGGGUGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.