Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10388 | 5' | -61.8 | NC_002687.1 | + | 215264 | 0.7 | 0.651143 |
Target: 5'- -gGgGUGCAGCGggucaaUCGGUGGCuCCAUCu -3' miRNA: 3'- agUgCGCGUCGC------AGCCACCG-GGUGGc -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 311138 | 0.7 | 0.641837 |
Target: 5'- aCAUGCGCAcgaGUCGGgGGCaCCAUCGu -3' miRNA: 3'- aGUGCGCGUcg-CAGCCaCCG-GGUGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 267871 | 0.7 | 0.626936 |
Target: 5'- -gAUGCGCAG-GUCGGUgcucaggaggugcuuGGCCCGCUu -3' miRNA: 3'- agUGCGCGUCgCAGCCA---------------CCGGGUGGc -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 2373 | 0.71 | 0.586071 |
Target: 5'- gCACGauCGGUGUCGGUcGGCCaCGCCc -3' miRNA: 3'- aGUGCgcGUCGCAGCCA-CCGG-GUGGc -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 200587 | 0.71 | 0.586071 |
Target: 5'- --cCGCGCGGuCGUCGG-GGCCggaaucuuuggCACCGg -3' miRNA: 3'- aguGCGCGUC-GCAGCCaCCGG-----------GUGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 238671 | 0.72 | 0.5403 |
Target: 5'- cCAUGCGgAuCGuUCGGUGGgCCACCGa -3' miRNA: 3'- aGUGCGCgUcGC-AGCCACCgGGUGGC- -5' |
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10388 | 5' | -61.8 | NC_002687.1 | + | 239046 | 1.09 | 0.002355 |
Target: 5'- uUCACGCGCAGCGUCGGUGGCCCACCGa -3' miRNA: 3'- -AGUGCGCGUCGCAGCCACCGGGUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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