miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10390 3' -48 NC_002687.1 + 76244 0.66 0.999996
Target:  5'- aAGACGCUGGgACCGCgggCAgaugGCAUgaacgcGUGGu -3'
miRNA:   3'- -UUUGUGACUgUGGUGa--GU----UGUA------CACC- -5'
10390 3' -48 NC_002687.1 + 71747 0.66 0.999994
Target:  5'- -uGCGgUGGCACCGCUCA-C-UGcGGg -3'
miRNA:   3'- uuUGUgACUGUGGUGAGUuGuACaCC- -5'
10390 3' -48 NC_002687.1 + 7024 0.66 0.999994
Target:  5'- -cACACUG-UACCGCUUGACAaccuuguccggGUGGu -3'
miRNA:   3'- uuUGUGACuGUGGUGAGUUGUa----------CACC- -5'
10390 3' -48 NC_002687.1 + 294059 0.66 0.999992
Target:  5'- ---aGCUGACG-CACUCGACGUGc-- -3'
miRNA:   3'- uuugUGACUGUgGUGAGUUGUACacc -5'
10390 3' -48 NC_002687.1 + 27562 0.66 0.999989
Target:  5'- ---gACUcGCGCCGCUCAGCgaccGUGUcGGg -3'
miRNA:   3'- uuugUGAcUGUGGUGAGUUG----UACA-CC- -5'
10390 3' -48 NC_002687.1 + 129041 0.66 0.999989
Target:  5'- cGGACACUGucaACCACcucuuugUCGACGgucGUGGu -3'
miRNA:   3'- -UUUGUGACug-UGGUG-------AGUUGUa--CACC- -5'
10390 3' -48 NC_002687.1 + 11709 0.66 0.999989
Target:  5'- uGGCACacACGCCugUCGugACAUGUGu -3'
miRNA:   3'- uUUGUGacUGUGGugAGU--UGUACACc -5'
10390 3' -48 NC_002687.1 + 260951 0.66 0.999985
Target:  5'- aAGGCACgcugGugGCCGC-CAACGUGa-- -3'
miRNA:   3'- -UUUGUGa---CugUGGUGaGUUGUACacc -5'
10390 3' -48 NC_002687.1 + 114836 0.67 0.999972
Target:  5'- cGACGa-GGCACCGCUCAACAcccUGUu- -3'
miRNA:   3'- uUUGUgaCUGUGGUGAGUUGU---ACAcc -5'
10390 3' -48 NC_002687.1 + 2282 0.67 0.999963
Target:  5'- --cUACUGACACCACUCcACGc---- -3'
miRNA:   3'- uuuGUGACUGUGGUGAGuUGUacacc -5'
10390 3' -48 NC_002687.1 + 312080 0.67 0.999963
Target:  5'- -uGCugUGAgCGCCGCUUGcACuGUGUGGu -3'
miRNA:   3'- uuUGugACU-GUGGUGAGU-UG-UACACC- -5'
10390 3' -48 NC_002687.1 + 330854 0.67 0.999963
Target:  5'- cGAACGCUGACGCCAC--AGCAg---- -3'
miRNA:   3'- -UUUGUGACUGUGGUGagUUGUacacc -5'
10390 3' -48 NC_002687.1 + 30500 0.67 0.999963
Target:  5'- uGACAaaagGACGCCACUCGagGCGauUGGa -3'
miRNA:   3'- uUUGUga--CUGUGGUGAGU--UGUacACC- -5'
10390 3' -48 NC_002687.1 + 315050 0.67 0.999951
Target:  5'- -cGCACuUGAUACCAgUCucauaauaaGugGUGUGGg -3'
miRNA:   3'- uuUGUG-ACUGUGGUgAG---------UugUACACC- -5'
10390 3' -48 NC_002687.1 + 259435 0.68 0.999915
Target:  5'- cGACGCcGGCGCCAa-CGACAcguaUGUGGu -3'
miRNA:   3'- uUUGUGaCUGUGGUgaGUUGU----ACACC- -5'
10390 3' -48 NC_002687.1 + 30925 0.68 0.999915
Target:  5'- uGACAUUGuccgaaACUACUCAACG-GUGGu -3'
miRNA:   3'- uUUGUGACug----UGGUGAGUUGUaCACC- -5'
10390 3' -48 NC_002687.1 + 161745 0.68 0.999858
Target:  5'- cGGCAUUGAgACUacgcggucgaACUCAACcUGUGGu -3'
miRNA:   3'- uUUGUGACUgUGG----------UGAGUUGuACACC- -5'
10390 3' -48 NC_002687.1 + 32026 0.68 0.999769
Target:  5'- gAGAUGCUGACGgCGCUCcGCAaGUGu -3'
miRNA:   3'- -UUUGUGACUGUgGUGAGuUGUaCACc -5'
10390 3' -48 NC_002687.1 + 37475 0.68 0.999769
Target:  5'- gAGACACUgucggGAUACgACuuUCAugGUGUGGa -3'
miRNA:   3'- -UUUGUGA-----CUGUGgUG--AGUugUACACC- -5'
10390 3' -48 NC_002687.1 + 162126 0.69 0.999545
Target:  5'- cGACAUUGugGCUcauGCUCGACGUGa-- -3'
miRNA:   3'- uUUGUGACugUGG---UGAGUUGUACacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.