miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10390 3' -48 NC_002687.1 + 241209 1.1 0.029381
Target:  5'- gAAACACUGACACCACUCAACAUGUGGa -3'
miRNA:   3'- -UUUGUGACUGUGGUGAGUUGUACACC- -5'
10390 3' -48 NC_002687.1 + 72540 0.81 0.776936
Target:  5'- -cGCACUGGCACUGCUCGGCgGUGUGu -3'
miRNA:   3'- uuUGUGACUGUGGUGAGUUG-UACACc -5'
10390 3' -48 NC_002687.1 + 257789 0.79 0.870709
Target:  5'- aAAACGCUGAUGCCGCaaacCAGCGUGUuGGg -3'
miRNA:   3'- -UUUGUGACUGUGGUGa---GUUGUACA-CC- -5'
10390 3' -48 NC_002687.1 + 9894 0.73 0.98584
Target:  5'- -cACACUGACGCCggACUUGACGgaugcGUGGc -3'
miRNA:   3'- uuUGUGACUGUGG--UGAGUUGUa----CACC- -5'
10390 3' -48 NC_002687.1 + 61181 0.71 0.997849
Target:  5'- --uCACUGuCGCCGCUCGACGaG-GGa -3'
miRNA:   3'- uuuGUGACuGUGGUGAGUUGUaCaCC- -5'
10390 3' -48 NC_002687.1 + 151664 0.71 0.998195
Target:  5'- cGAgGCUGGCACCACUCGAuCGUa--- -3'
miRNA:   3'- uUUgUGACUGUGGUGAGUU-GUAcacc -5'
10390 3' -48 NC_002687.1 + 252530 0.7 0.998493
Target:  5'- ---uGCUGACAa-ACUCAACAaGUGGa -3'
miRNA:   3'- uuugUGACUGUggUGAGUUGUaCACC- -5'
10390 3' -48 NC_002687.1 + 146072 0.7 0.998493
Target:  5'- aGAAgGaaGACGCCACcguaAGCAUGUGGg -3'
miRNA:   3'- -UUUgUgaCUGUGGUGag--UUGUACACC- -5'
10390 3' -48 NC_002687.1 + 263704 0.7 0.999151
Target:  5'- -uGCGugaaUGGCACCGCUCucGACAcGUGGa -3'
miRNA:   3'- uuUGUg---ACUGUGGUGAG--UUGUaCACC- -5'
10390 3' -48 NC_002687.1 + 162126 0.69 0.999545
Target:  5'- cGACAUUGugGCUcauGCUCGACGUGa-- -3'
miRNA:   3'- uUUGUGACugUGG---UGAGUUGUACacc -5'
10390 3' -48 NC_002687.1 + 32026 0.68 0.999769
Target:  5'- gAGAUGCUGACGgCGCUCcGCAaGUGu -3'
miRNA:   3'- -UUUGUGACUGUgGUGAGuUGUaCACc -5'
10390 3' -48 NC_002687.1 + 37475 0.68 0.999769
Target:  5'- gAGACACUgucggGAUACgACuuUCAugGUGUGGa -3'
miRNA:   3'- -UUUGUGA-----CUGUGgUG--AGUugUACACC- -5'
10390 3' -48 NC_002687.1 + 161745 0.68 0.999858
Target:  5'- cGGCAUUGAgACUacgcggucgaACUCAACcUGUGGu -3'
miRNA:   3'- uUUGUGACUgUGG----------UGAGUUGuACACC- -5'
10390 3' -48 NC_002687.1 + 259435 0.68 0.999915
Target:  5'- cGACGCcGGCGCCAa-CGACAcguaUGUGGu -3'
miRNA:   3'- uUUGUGaCUGUGGUgaGUUGU----ACACC- -5'
10390 3' -48 NC_002687.1 + 30925 0.68 0.999915
Target:  5'- uGACAUUGuccgaaACUACUCAACG-GUGGu -3'
miRNA:   3'- uUUGUGACug----UGGUGAGUUGUaCACC- -5'
10390 3' -48 NC_002687.1 + 315050 0.67 0.999951
Target:  5'- -cGCACuUGAUACCAgUCucauaauaaGugGUGUGGg -3'
miRNA:   3'- uuUGUG-ACUGUGGUgAG---------UugUACACC- -5'
10390 3' -48 NC_002687.1 + 312080 0.67 0.999963
Target:  5'- -uGCugUGAgCGCCGCUUGcACuGUGUGGu -3'
miRNA:   3'- uuUGugACU-GUGGUGAGU-UG-UACACC- -5'
10390 3' -48 NC_002687.1 + 30500 0.67 0.999963
Target:  5'- uGACAaaagGACGCCACUCGagGCGauUGGa -3'
miRNA:   3'- uUUGUga--CUGUGGUGAGU--UGUacACC- -5'
10390 3' -48 NC_002687.1 + 330854 0.67 0.999963
Target:  5'- cGAACGCUGACGCCAC--AGCAg---- -3'
miRNA:   3'- -UUUGUGACUGUGGUGagUUGUacacc -5'
10390 3' -48 NC_002687.1 + 2282 0.67 0.999963
Target:  5'- --cUACUGACACCACUCcACGc---- -3'
miRNA:   3'- uuuGUGACUGUGGUGAGuUGUacacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.