miRNA display CGI


Results 1 - 20 of 24 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10390 5' -56.3 NC_002687.1 + 142744 0.66 0.980365
Target:  5'- aCGCCGgGCGUCaaGUGGCUuuGCGUg -3'
miRNA:   3'- -GUGGUgUGCAGcaCACCGGcuCGUAg -5'
10390 5' -56.3 NC_002687.1 + 138689 0.66 0.980365
Target:  5'- gACC-CAUGUCGUugaaccauucGUGGUCGAGaauaGUCc -3'
miRNA:   3'- gUGGuGUGCAGCA----------CACCGGCUCg---UAG- -5'
10390 5' -56.3 NC_002687.1 + 85506 0.66 0.979113
Target:  5'- gCGCUACGgaccaggggucucuuCGUCGcccuUGUGGCCGA-CGUCu -3'
miRNA:   3'- -GUGGUGU---------------GCAGC----ACACCGGCUcGUAG- -5'
10390 5' -56.3 NC_002687.1 + 332021 0.66 0.978245
Target:  5'- aCACCgACACuGUCG-GUGuCCGAGCugguGUCg -3'
miRNA:   3'- -GUGG-UGUG-CAGCaCACcGGCUCG----UAG- -5'
10390 5' -56.3 NC_002687.1 + 63786 0.66 0.978245
Target:  5'- gUAgCACACGUCGUuugaGUGGgCG-GCGUa -3'
miRNA:   3'- -GUgGUGUGCAGCA----CACCgGCuCGUAg -5'
10390 5' -56.3 NC_002687.1 + 241636 0.66 0.978245
Target:  5'- aCACCGgGgGU-GUGgagGGuuGGGCGUCg -3'
miRNA:   3'- -GUGGUgUgCAgCACa--CCggCUCGUAG- -5'
10390 5' -56.3 NC_002687.1 + 328515 0.66 0.975961
Target:  5'- aACCACGCGcUG-GUGGCCauuuaguugaGAGCAa- -3'
miRNA:   3'- gUGGUGUGCaGCaCACCGG----------CUCGUag -5'
10390 5' -56.3 NC_002687.1 + 300775 0.66 0.975961
Target:  5'- aGCCAuggUugGU-GUGUgGGCuCGGGCGUCa -3'
miRNA:   3'- gUGGU---GugCAgCACA-CCG-GCUCGUAG- -5'
10390 5' -56.3 NC_002687.1 + 169090 0.66 0.975723
Target:  5'- aACCAgAUGUUGccgugccugaaucUGUGGCCGcagGGUAUCu -3'
miRNA:   3'- gUGGUgUGCAGC-------------ACACCGGC---UCGUAG- -5'
10390 5' -56.3 NC_002687.1 + 25345 0.66 0.974509
Target:  5'- aCAUCACGagGUUcgaguuugccucaaaGUGUGGCCGccuGCGUCa -3'
miRNA:   3'- -GUGGUGUg-CAG---------------CACACCGGCu--CGUAG- -5'
10390 5' -56.3 NC_002687.1 + 242707 0.66 0.973506
Target:  5'- gACCGCucuccuCGgguaCGUGUuaucGGCCGAGCAc- -3'
miRNA:   3'- gUGGUGu-----GCa---GCACA----CCGGCUCGUag -5'
10390 5' -56.3 NC_002687.1 + 65749 0.66 0.973506
Target:  5'- aACgACACGauUgGUGUGGUgaacaCGGGCAUCc -3'
miRNA:   3'- gUGgUGUGC--AgCACACCG-----GCUCGUAG- -5'
10390 5' -56.3 NC_002687.1 + 7466 0.66 0.96806
Target:  5'- uCAUCACACGacaCGcGUGGCCcGGCAa- -3'
miRNA:   3'- -GUGGUGUGCa--GCaCACCGGcUCGUag -5'
10390 5' -56.3 NC_002687.1 + 238006 0.66 0.96806
Target:  5'- aACCuCGCGagGUugGUGGCCGAGUg-- -3'
miRNA:   3'- gUGGuGUGCagCA--CACCGGCUCGuag -5'
10390 5' -56.3 NC_002687.1 + 240817 0.67 0.961863
Target:  5'- gGCCACACGaCGUGUGGU--GGUAc- -3'
miRNA:   3'- gUGGUGUGCaGCACACCGgcUCGUag -5'
10390 5' -56.3 NC_002687.1 + 259800 0.67 0.961863
Target:  5'- gCACCACAuacgUGUCGU-UGGCgCcGGCGUCg -3'
miRNA:   3'- -GUGGUGU----GCAGCAcACCG-GcUCGUAG- -5'
10390 5' -56.3 NC_002687.1 + 99645 0.67 0.960866
Target:  5'- gACCAaAUGcugucgaucgacucUCGUGUGGCCGA-CAUCu -3'
miRNA:   3'- gUGGUgUGC--------------AGCACACCGGCUcGUAG- -5'
10390 5' -56.3 NC_002687.1 + 209135 0.68 0.947074
Target:  5'- gCACCA-ACGUCGUcGUGGUCGucGuCGUCa -3'
miRNA:   3'- -GUGGUgUGCAGCA-CACCGGCu-C-GUAG- -5'
10390 5' -56.3 NC_002687.1 + 209063 0.68 0.947074
Target:  5'- gCACCA-ACGUCGUcGUGGUCGucGuCGUCa -3'
miRNA:   3'- -GUGGUgUGCAGCA-CACCGGCu-C-GUAG- -5'
10390 5' -56.3 NC_002687.1 + 84168 0.72 0.789537
Target:  5'- gGCCACAgaaGUCGUGUGGgCguucaGAGCGUUg -3'
miRNA:   3'- gUGGUGUg--CAGCACACCgG-----CUCGUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.