Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10390 | 5' | -56.3 | NC_002687.1 | + | 241171 | 1.09 | 0.006199 |
Target: 5'- cCACCACACGUCGUGUGGCCGAGCAUCu -3' miRNA: 3'- -GUGGUGUGCAGCACACCGGCUCGUAG- -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 9958 | 0.76 | 0.57197 |
Target: 5'- aCGCCGCugGUaaagGUGUGGCCc-GCAUCg -3' miRNA: 3'- -GUGGUGugCAg---CACACCGGcuCGUAG- -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 178420 | 0.74 | 0.678538 |
Target: 5'- --aUACA-GUCGUGUGGCCGAGUGUa -3' miRNA: 3'- gugGUGUgCAGCACACCGGCUCGUAg -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 263019 | 0.73 | 0.735497 |
Target: 5'- gGCCGCgACGUCGUuguugGUGGCCGGGaguuUCu -3' miRNA: 3'- gUGGUG-UGCAGCA-----CACCGGCUCgu--AG- -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 84168 | 0.72 | 0.789537 |
Target: 5'- gGCCACAgaaGUCGUGUGGgCguucaGAGCGUUg -3' miRNA: 3'- gUGGUGUg--CAGCACACCgG-----CUCGUAG- -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 209135 | 0.68 | 0.947074 |
Target: 5'- gCACCA-ACGUCGUcGUGGUCGucGuCGUCa -3' miRNA: 3'- -GUGGUgUGCAGCA-CACCGGCu-C-GUAG- -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 209063 | 0.68 | 0.947074 |
Target: 5'- gCACCA-ACGUCGUcGUGGUCGucGuCGUCa -3' miRNA: 3'- -GUGGUgUGCAGCA-CACCGGCu-C-GUAG- -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 99645 | 0.67 | 0.960866 |
Target: 5'- gACCAaAUGcugucgaucgacucUCGUGUGGCCGA-CAUCu -3' miRNA: 3'- gUGGUgUGC--------------AGCACACCGGCUcGUAG- -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 240817 | 0.67 | 0.961863 |
Target: 5'- gGCCACACGaCGUGUGGU--GGUAc- -3' miRNA: 3'- gUGGUGUGCaGCACACCGgcUCGUag -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 259800 | 0.67 | 0.961863 |
Target: 5'- gCACCACAuacgUGUCGU-UGGCgCcGGCGUCg -3' miRNA: 3'- -GUGGUGU----GCAGCAcACCG-GcUCGUAG- -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 7466 | 0.66 | 0.96806 |
Target: 5'- uCAUCACACGacaCGcGUGGCCcGGCAa- -3' miRNA: 3'- -GUGGUGUGCa--GCaCACCGGcUCGUag -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 238006 | 0.66 | 0.96806 |
Target: 5'- aACCuCGCGagGUugGUGGCCGAGUg-- -3' miRNA: 3'- gUGGuGUGCagCA--CACCGGCUCGuag -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 65749 | 0.66 | 0.973506 |
Target: 5'- aACgACACGauUgGUGUGGUgaacaCGGGCAUCc -3' miRNA: 3'- gUGgUGUGC--AgCACACCG-----GCUCGUAG- -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 242707 | 0.66 | 0.973506 |
Target: 5'- gACCGCucuccuCGgguaCGUGUuaucGGCCGAGCAc- -3' miRNA: 3'- gUGGUGu-----GCa---GCACA----CCGGCUCGUag -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 25345 | 0.66 | 0.974509 |
Target: 5'- aCAUCACGagGUUcgaguuugccucaaaGUGUGGCCGccuGCGUCa -3' miRNA: 3'- -GUGGUGUg-CAG---------------CACACCGGCu--CGUAG- -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 169090 | 0.66 | 0.975723 |
Target: 5'- aACCAgAUGUUGccgugccugaaucUGUGGCCGcagGGUAUCu -3' miRNA: 3'- gUGGUgUGCAGC-------------ACACCGGC---UCGUAG- -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 300775 | 0.66 | 0.975961 |
Target: 5'- aGCCAuggUugGU-GUGUgGGCuCGGGCGUCa -3' miRNA: 3'- gUGGU---GugCAgCACA-CCG-GCUCGUAG- -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 328515 | 0.66 | 0.975961 |
Target: 5'- aACCACGCGcUG-GUGGCCauuuaguugaGAGCAa- -3' miRNA: 3'- gUGGUGUGCaGCaCACCGG----------CUCGUag -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 241636 | 0.66 | 0.978245 |
Target: 5'- aCACCGgGgGU-GUGgagGGuuGGGCGUCg -3' miRNA: 3'- -GUGGUgUgCAgCACa--CCggCUCGUAG- -5' |
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10390 | 5' | -56.3 | NC_002687.1 | + | 332021 | 0.66 | 0.978245 |
Target: 5'- aCACCgACACuGUCG-GUGuCCGAGCugguGUCg -3' miRNA: 3'- -GUGG-UGUG-CAGCaCACcGGCUCG----UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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