miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10391 3' -50.1 NC_002687.1 + 21334 0.66 0.999915
Target:  5'- --uGCAUCGG-CgCCUUCgGAGAGCa- -3'
miRNA:   3'- gcuCGUAGCCaG-GGAAGaCUUUUGag -5'
10391 3' -50.1 NC_002687.1 + 85216 0.66 0.999915
Target:  5'- aGAGCAuuaUCGGUggaaCCaCUUCUacAGACUCc -3'
miRNA:   3'- gCUCGU---AGCCA----GG-GAAGAcuUUUGAG- -5'
10391 3' -50.1 NC_002687.1 + 154454 0.66 0.999915
Target:  5'- aGGGCAUCcGUCgUgUUCUGGAGGCg- -3'
miRNA:   3'- gCUCGUAGcCAG-GgAAGACUUUUGag -5'
10391 3' -50.1 NC_002687.1 + 46077 0.66 0.999915
Target:  5'- aGAGC-UCGGUCUCg---GAAAACg- -3'
miRNA:   3'- gCUCGuAGCCAGGGaagaCUUUUGag -5'
10391 3' -50.1 NC_002687.1 + 217990 0.67 0.999645
Target:  5'- aUGAGauacuuUCGGUaCUCUUCcGggGGCUCa -3'
miRNA:   3'- -GCUCgu----AGCCA-GGGAAGaCuuUUGAG- -5'
10391 3' -50.1 NC_002687.1 + 235977 0.67 0.999645
Target:  5'- aGAGCAUUGGUCUUUgccgUCUccuccAAAACUCu -3'
miRNA:   3'- gCUCGUAGCCAGGGA----AGAc----UUUUGAG- -5'
10391 3' -50.1 NC_002687.1 + 299867 0.68 0.998567
Target:  5'- aCGGGUucaAUCGGUCCCUcUCcGuuGAUUCu -3'
miRNA:   3'- -GCUCG---UAGCCAGGGA-AGaCuuUUGAG- -5'
10391 3' -50.1 NC_002687.1 + 84094 0.69 0.997963
Target:  5'- -uGGCAUCGGUgccgcUCCUUCUGGGAcgcaccGCUUc -3'
miRNA:   3'- gcUCGUAGCCA-----GGGAAGACUUU------UGAG- -5'
10391 3' -50.1 NC_002687.1 + 44212 0.69 0.997963
Target:  5'- gGGGUAUCcaUCCCUUCcgGGAAugUCg -3'
miRNA:   3'- gCUCGUAGccAGGGAAGa-CUUUugAG- -5'
10391 3' -50.1 NC_002687.1 + 227750 0.69 0.997159
Target:  5'- uGAGCgaaGUCGGUCCaaggCUGAuGAugUCg -3'
miRNA:   3'- gCUCG---UAGCCAGGgaa-GACU-UUugAG- -5'
10391 3' -50.1 NC_002687.1 + 320054 0.7 0.995474
Target:  5'- uGuGCA-CGGUCCUcccugUCUGGAAGCUa -3'
miRNA:   3'- gCuCGUaGCCAGGGa----AGACUUUUGAg -5'
10391 3' -50.1 NC_002687.1 + 245861 0.7 0.995474
Target:  5'- uGuGCA-CGGUCCUcccugUCUGGAAGCUa -3'
miRNA:   3'- gCuCGUaGCCAGGGa----AGACUUUUGAg -5'
10391 3' -50.1 NC_002687.1 + 116925 0.7 0.994759
Target:  5'- -aAGCAUCGGUCCCU-CgacGAccuuGAACUUa -3'
miRNA:   3'- gcUCGUAGCCAGGGAaGa--CU----UUUGAG- -5'
10391 3' -50.1 NC_002687.1 + 139682 0.72 0.983373
Target:  5'- aCGGGUGUCGGuaUCCCUgauUCUGAAAAacgCg -3'
miRNA:   3'- -GCUCGUAGCC--AGGGA---AGACUUUUga-G- -5'
10391 3' -50.1 NC_002687.1 + 243096 1.11 0.016329
Target:  5'- gCGAGCAUCGGUCCCUUCUGAAAACUCg -3'
miRNA:   3'- -GCUCGUAGCCAGGGAAGACUUUUGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.