miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10396 3' -57.2 NC_002687.1 + 313385 0.66 0.974157
Target:  5'- -aGUUGC-CGUGGCcgGUcGCGugACCg -3'
miRNA:   3'- cgCAGUGcGCACCGa-CGaCGCugUGG- -5'
10396 3' -57.2 NC_002687.1 + 304168 0.66 0.974157
Target:  5'- aCGUUgguGCGgGUGG-UGCUGCcGGCgACCa -3'
miRNA:   3'- cGCAG---UGCgCACCgACGACG-CUG-UGG- -5'
10396 3' -57.2 NC_002687.1 + 217424 0.66 0.974157
Target:  5'- aGCG-CAaGCGuUGGC-GCUGCgGGCACg -3'
miRNA:   3'- -CGCaGUgCGC-ACCGaCGACG-CUGUGg -5'
10396 3' -57.2 NC_002687.1 + 294973 0.66 0.974157
Target:  5'- gGCGgacucgCACGCGUGGUgauacucGCUccagaaacGCGGgcCACCg -3'
miRNA:   3'- -CGCa-----GUGCGCACCGa------CGA--------CGCU--GUGG- -5'
10396 3' -57.2 NC_002687.1 + 22188 0.66 0.97081
Target:  5'- cCGUCGCGCauuauguacggcugGUGGCaGUU-CGACACUu -3'
miRNA:   3'- cGCAGUGCG--------------CACCGaCGAcGCUGUGG- -5'
10396 3' -57.2 NC_002687.1 + 11501 0.66 0.968885
Target:  5'- aGCgGUCGuagcaGCGgcGGCUauagcaGCUGCGACACg -3'
miRNA:   3'- -CG-CAGUg----CGCa-CCGA------CGACGCUGUGg -5'
10396 3' -57.2 NC_002687.1 + 18573 0.66 0.968885
Target:  5'- cGUGUgCACGCGaUGGCggcgggggaaGCUGUGGuCAUCc -3'
miRNA:   3'- -CGCA-GUGCGC-ACCGa---------CGACGCU-GUGG- -5'
10396 3' -57.2 NC_002687.1 + 11408 0.66 0.968885
Target:  5'- aGCGguaGCG-GUGGCaGCaGCGGCAgCa -3'
miRNA:   3'- -CGCag-UGCgCACCGaCGaCGCUGUgG- -5'
10396 3' -57.2 NC_002687.1 + 23589 0.66 0.968885
Target:  5'- uGCGcUC-UGCGUcaCUGCUGCcACACCa -3'
miRNA:   3'- -CGC-AGuGCGCAccGACGACGcUGUGG- -5'
10396 3' -57.2 NC_002687.1 + 30463 0.66 0.968885
Target:  5'- cGCGcCACGgGUcugaGGUUG-UGCGACggGCCg -3'
miRNA:   3'- -CGCaGUGCgCA----CCGACgACGCUG--UGG- -5'
10396 3' -57.2 NC_002687.1 + 274432 0.66 0.968885
Target:  5'- uGCagaACGCGUGGCgGUUGUucuGACGCa -3'
miRNA:   3'- -CGcagUGCGCACCGaCGACG---CUGUGg -5'
10396 3' -57.2 NC_002687.1 + 154510 0.66 0.965376
Target:  5'- gGUGaCGCGCGgaacacugacucGGCUGgcuauuggcaaCUGCGACAUCg -3'
miRNA:   3'- -CGCaGUGCGCa-----------CCGAC-----------GACGCUGUGG- -5'
10396 3' -57.2 NC_002687.1 + 106932 0.67 0.955772
Target:  5'- gGCGUguucuucacuaaaCACGUacagcuugccgGUGGUUGCUGCaucccACACCg -3'
miRNA:   3'- -CGCA-------------GUGCG-----------CACCGACGACGc----UGUGG- -5'
10396 3' -57.2 NC_002687.1 + 312099 0.67 0.952456
Target:  5'- uGCGUCACaGCa--GCUGCcgcGCGGCGCg -3'
miRNA:   3'- -CGCAGUG-CGcacCGACGa--CGCUGUGg -5'
10396 3' -57.2 NC_002687.1 + 101029 0.67 0.952456
Target:  5'- cGCGUCGC-CGacGGUgaagGCGGCACCg -3'
miRNA:   3'- -CGCAGUGcGCa-CCGacgaCGCUGUGG- -5'
10396 3' -57.2 NC_002687.1 + 297001 0.67 0.952456
Target:  5'- cGCGUCcuCG-GUGGCgaugucucGCUGUG-CGCCg -3'
miRNA:   3'- -CGCAGu-GCgCACCGa-------CGACGCuGUGG- -5'
10396 3' -57.2 NC_002687.1 + 262002 0.67 0.948581
Target:  5'- uCGagCACGCaGcGGCUGuCUGUGGCACa -3'
miRNA:   3'- cGCa-GUGCG-CaCCGAC-GACGCUGUGg -5'
10396 3' -57.2 NC_002687.1 + 330104 0.67 0.948581
Target:  5'- -gGUgGCGUGaGGCUGCUGUaGACAa- -3'
miRNA:   3'- cgCAgUGCGCaCCGACGACG-CUGUgg -5'
10396 3' -57.2 NC_002687.1 + 40174 0.67 0.944502
Target:  5'- gGCGUgGCGaCGUGGCuauuUGCaGUGACGg- -3'
miRNA:   3'- -CGCAgUGC-GCACCG----ACGaCGCUGUgg -5'
10396 3' -57.2 NC_002687.1 + 239949 0.67 0.944083
Target:  5'- uUGUC-CGgGUGG-UGCUGCagggcgaGACGCCg -3'
miRNA:   3'- cGCAGuGCgCACCgACGACG-------CUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.