miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10396 5' -55 NC_002687.1 + 22117 0.66 0.988669
Target:  5'- gAGGUggcgGAC-GCGCUCCGCcaca-GCu -3'
miRNA:   3'- gUCCAa---CUGuCGCGAGGCGuacagCG- -5'
10396 5' -55 NC_002687.1 + 231975 0.66 0.988532
Target:  5'- gAGG-UGGCAagcgaucGCGCaUCCGCGUGaaGCc -3'
miRNA:   3'- gUCCaACUGU-------CGCG-AGGCGUACagCG- -5'
10396 5' -55 NC_002687.1 + 73701 0.66 0.987833
Target:  5'- aUAGGUcGACGGCGCagUCGCGUcugggagacaugacgGUCGg -3'
miRNA:   3'- -GUCCAaCUGUCGCGa-GGCGUA---------------CAGCg -5'
10396 5' -55 NC_002687.1 + 281494 0.66 0.98725
Target:  5'- aCGGGcugUUGAUcuCGCUUCGC-UGUUGCg -3'
miRNA:   3'- -GUCC---AACUGucGCGAGGCGuACAGCG- -5'
10396 5' -55 NC_002687.1 + 41365 0.66 0.984007
Target:  5'- aGGGUUGugcucgagaAGCGCgagCCGCAagccgUGUCGa -3'
miRNA:   3'- gUCCAACug-------UCGCGa--GGCGU-----ACAGCg -5'
10396 5' -55 NC_002687.1 + 297679 0.66 0.984007
Target:  5'- gAGGUUGuCAcccugcucgcGCGcCUCUGCGUGUCcCg -3'
miRNA:   3'- gUCCAACuGU----------CGC-GAGGCGUACAGcG- -5'
10396 5' -55 NC_002687.1 + 321517 0.67 0.980174
Target:  5'- -----cGAUAGCGaugCCGCAaGUCGCa -3'
miRNA:   3'- guccaaCUGUCGCga-GGCGUaCAGCG- -5'
10396 5' -55 NC_002687.1 + 316758 0.68 0.967651
Target:  5'- cCAGGUaGAUccuGGUgguauccuucacGCUUCGCGUGUUGCu -3'
miRNA:   3'- -GUCCAaCUG---UCG------------CGAGGCGUACAGCG- -5'
10396 5' -55 NC_002687.1 + 131192 0.68 0.967651
Target:  5'- aAGGUcGACAGCuaaUCCG-AUGUCGUc -3'
miRNA:   3'- gUCCAaCUGUCGcg-AGGCgUACAGCG- -5'
10396 5' -55 NC_002687.1 + 48143 0.69 0.932715
Target:  5'- uGGGggGACAGC-CUCCG-GUGgCGCa -3'
miRNA:   3'- gUCCaaCUGUCGcGAGGCgUACaGCG- -5'
10396 5' -55 NC_002687.1 + 159175 0.72 0.836151
Target:  5'- cCGGcGgcGACGGCGgUCCGUcguUGUCGCc -3'
miRNA:   3'- -GUC-CaaCUGUCGCgAGGCGu--ACAGCG- -5'
10396 5' -55 NC_002687.1 + 281760 0.73 0.794631
Target:  5'- gAGG-UGGCAGCGCaagCCGCucccGUUGCg -3'
miRNA:   3'- gUCCaACUGUCGCGa--GGCGua--CAGCG- -5'
10396 5' -55 NC_002687.1 + 32032 0.86 0.216998
Target:  5'- ----cUGACGGCGCUCCGCAagUGUCGCa -3'
miRNA:   3'- guccaACUGUCGCGAGGCGU--ACAGCG- -5'
10396 5' -55 NC_002687.1 + 254604 1.1 0.006479
Target:  5'- gCAGGUUGACAGCGCUCCGCAUGUCGCc -3'
miRNA:   3'- -GUCCAACUGUCGCGAGGCGUACAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.