miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10397 3' -43.8 NC_002687.1 + 332046 0.65 1
Target:  5'- uGCGcCGCCUUGAggaccACAACGGcccuccgugaaugcAACGAAc- -3'
miRNA:   3'- -UGC-GUGGAACU-----UGUUGCU--------------UUGUUUac -5'
10397 3' -43.8 NC_002687.1 + 184987 0.66 1
Target:  5'- uGCGUcuacgACUUUGAucggcauGCGAUGGAACAGAUa -3'
miRNA:   3'- -UGCG-----UGGAACU-------UGUUGCUUUGUUUAc -5'
10397 3' -43.8 NC_002687.1 + 264013 0.67 1
Target:  5'- -aGCGCCaUGAGCGACGAc------- -3'
miRNA:   3'- ugCGUGGaACUUGUUGCUuuguuuac -5'
10397 3' -43.8 NC_002687.1 + 332251 0.67 1
Target:  5'- -gGCG-CUUGGGCGugGAGGCGAuUGc -3'
miRNA:   3'- ugCGUgGAACUUGUugCUUUGUUuAC- -5'
10397 3' -43.8 NC_002687.1 + 67511 0.67 1
Target:  5'- aGCGCAacggcugcuCCUUGAAUAACcGAaagcGACAAGUc -3'
miRNA:   3'- -UGCGU---------GGAACUUGUUG-CU----UUGUUUAc -5'
10397 3' -43.8 NC_002687.1 + 126507 0.67 1
Target:  5'- cGCGCACaagUGAACAA-GAAGCu--UGg -3'
miRNA:   3'- -UGCGUGga-ACUUGUUgCUUUGuuuAC- -5'
10397 3' -43.8 NC_002687.1 + 85448 0.67 1
Target:  5'- cACGCACgUUGGuuguCGGGACAGAg- -3'
miRNA:   3'- -UGCGUGgAACUuguuGCUUUGUUUac -5'
10397 3' -43.8 NC_002687.1 + 183629 0.67 1
Target:  5'- uGCGUGCCUUGGACAGuaguugUGAGugGguuAGUGu -3'
miRNA:   3'- -UGCGUGGAACUUGUU------GCUUugU---UUAC- -5'
10397 3' -43.8 NC_002687.1 + 35285 0.67 1
Target:  5'- gACGC-CCgagGAGCG-CGAAuuACAAAUGu -3'
miRNA:   3'- -UGCGuGGaa-CUUGUuGCUU--UGUUUAC- -5'
10397 3' -43.8 NC_002687.1 + 199472 0.66 1
Target:  5'- cCGCGCagagGGGCAGgGAGACAGGg- -3'
miRNA:   3'- uGCGUGgaa-CUUGUUgCUUUGUUUac -5'
10397 3' -43.8 NC_002687.1 + 281867 0.66 1
Target:  5'- uUGCACUaacGcAACAGCGAAGCGAGa- -3'
miRNA:   3'- uGCGUGGaa-C-UUGUUGCUUUGUUUac -5'
10397 3' -43.8 NC_002687.1 + 47322 0.66 1
Target:  5'- -aGUAUCUgacuUGAACAGCGAAAUAc--- -3'
miRNA:   3'- ugCGUGGA----ACUUGUUGCUUUGUuuac -5'
10397 3' -43.8 NC_002687.1 + 270722 0.66 1
Target:  5'- gGCGCcacgGCUUcGAACGACGGGugAaaGAUGg -3'
miRNA:   3'- -UGCG----UGGAaCUUGUUGCUUugU--UUAC- -5'
10397 3' -43.8 NC_002687.1 + 6109 0.66 1
Target:  5'- cCGgACUcUGAcACAACGAAACAAGc- -3'
miRNA:   3'- uGCgUGGaACU-UGUUGCUUUGUUUac -5'
10397 3' -43.8 NC_002687.1 + 321026 0.66 1
Target:  5'- cUGCGCCUgaGAACcAUGAAAUAAAa- -3'
miRNA:   3'- uGCGUGGAa-CUUGuUGCUUUGUUUac -5'
10397 3' -43.8 NC_002687.1 + 20361 0.66 1
Target:  5'- gGCG-ACCUUGAuugcaagaaguacGCGACGAAGCu---- -3'
miRNA:   3'- -UGCgUGGAACU-------------UGUUGCUUUGuuuac -5'
10397 3' -43.8 NC_002687.1 + 196196 0.66 1
Target:  5'- gGCG-ACCUUGAuugcaagaaguacGCGACGAAGCu---- -3'
miRNA:   3'- -UGCgUGGAACU-------------UGUUGCUUUGuuuac -5'
10397 3' -43.8 NC_002687.1 + 221788 0.66 1
Target:  5'- gGCG-ACCUUGAuugcaagaaguacGCGACGAAGCu---- -3'
miRNA:   3'- -UGCgUGGAACU-------------UGUUGCUUUGuuuac -5'
10397 3' -43.8 NC_002687.1 + 239278 0.66 1
Target:  5'- cCGaCACCagGGACAACGcGAACAAGc- -3'
miRNA:   3'- uGC-GUGGaaCUUGUUGC-UUUGUUUac -5'
10397 3' -43.8 NC_002687.1 + 306502 0.66 1
Target:  5'- cUGCACCgacAACAACGAGaagGCAuuUGg -3'
miRNA:   3'- uGCGUGGaacUUGUUGCUU---UGUuuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.