miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
104 5' -56.8 AC_000006.1 + 17382 1.1 0.00037
Target:  5'- aUCUUCCAUCUCCACCACCGUGGGCGGc -3'
miRNA:   3'- -AGAAGGUAGAGGUGGUGGCACCCGCC- -5'
104 5' -56.8 AC_000006.1 + 21969 0.75 0.155938
Target:  5'- --aUCCAUCUCCACCA-CGUGGuccuuGUGGa -3'
miRNA:   3'- agaAGGUAGAGGUGGUgGCACC-----CGCC- -5'
104 5' -56.8 AC_000006.1 + 8722 0.7 0.311324
Target:  5'- --gUCgCAUCUcgaaugaccucgCCGCCACCGUGGagcgcGCGGg -3'
miRNA:   3'- agaAG-GUAGA------------GGUGGUGGCACC-----CGCC- -5'
104 5' -56.8 AC_000006.1 + 9103 0.69 0.335361
Target:  5'- cUCUUCUAUUUCUuCCuCUGgGGGCGGu -3'
miRNA:   3'- -AGAAGGUAGAGGuGGuGGCaCCCGCC- -5'
104 5' -56.8 AC_000006.1 + 4612 0.69 0.360726
Target:  5'- ---aUCAUgUCCACCugCG-GGGCGa -3'
miRNA:   3'- agaaGGUAgAGGUGGugGCaCCCGCc -5'
104 5' -56.8 AC_000006.1 + 32355 0.67 0.434631
Target:  5'- --cUCagcaGUCUCUGCCGCCG-GGGCu- -3'
miRNA:   3'- agaAGg---UAGAGGUGGUGGCaCCCGcc -5'
104 5' -56.8 AC_000006.1 + 24807 0.67 0.474722
Target:  5'- uUCUUCCAUCUCUuCCACUa---GCGGc -3'
miRNA:   3'- -AGAAGGUAGAGGuGGUGGcaccCGCC- -5'
104 5' -56.8 AC_000006.1 + 10762 0.66 0.538058
Target:  5'- cUCUUCCAagUCCAUCucuguCUGUGGcuGUGGc -3'
miRNA:   3'- -AGAAGGUagAGGUGGu----GGCACC--CGCC- -5'
104 5' -56.8 AC_000006.1 + 6416 0.66 0.548914
Target:  5'- aUCaUCCAaggccaUCUGCCACuCGcGGGCGGc -3'
miRNA:   3'- -AGaAGGUag----AGGUGGUG-GCaCCCGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.