miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10400 5' -56.9 NC_002687.1 + 18543 0.66 0.971071
Target:  5'- uUGCG-UCGcugGGGCUGGCucaucaugcuucguGUGCaCGCGAu -3'
miRNA:   3'- -ACGCaAGU---UCCGACUGu-------------CGCG-GCGCU- -5'
10400 5' -56.9 NC_002687.1 + 79586 0.66 0.969971
Target:  5'- aUGUGUcuggcUCAAGGUUGACcagAGCGaUgGCGGa -3'
miRNA:   3'- -ACGCA-----AGUUCCGACUG---UCGC-GgCGCU- -5'
10400 5' -56.9 NC_002687.1 + 256267 0.66 0.967092
Target:  5'- cGUGUgcuuccgCGGGaGC-GAUAGCGCCGCcGAc -3'
miRNA:   3'- aCGCAa------GUUC-CGaCUGUCGCGGCG-CU- -5'
10400 5' -56.9 NC_002687.1 + 291318 0.66 0.964022
Target:  5'- aGCGgccgCGAGGCUGucguaGCuGCuGCCGCu- -3'
miRNA:   3'- aCGCaa--GUUCCGAC-----UGuCG-CGGCGcu -5'
10400 5' -56.9 NC_002687.1 + 41976 0.66 0.960758
Target:  5'- cGCGUgUCAcgaacGGUUGGCAcCGuCCGCGAa -3'
miRNA:   3'- aCGCA-AGUu----CCGACUGUcGC-GGCGCU- -5'
10400 5' -56.9 NC_002687.1 + 45343 0.66 0.953628
Target:  5'- gGCGU--GAGGCaGGCAGCGggaCGCGc -3'
miRNA:   3'- aCGCAagUUCCGaCUGUCGCg--GCGCu -5'
10400 5' -56.9 NC_002687.1 + 145287 0.67 0.949754
Target:  5'- cUGCGaUCcAGGCUucgGAgAGCGuuGUGAa -3'
miRNA:   3'- -ACGCaAGuUCCGA---CUgUCGCggCGCU- -5'
10400 5' -56.9 NC_002687.1 + 252965 0.67 0.949754
Target:  5'- cGUGUUCAaguaGGGCUcGAgGGUuuCCGCGAg -3'
miRNA:   3'- aCGCAAGU----UCCGA-CUgUCGc-GGCGCU- -5'
10400 5' -56.9 NC_002687.1 + 307431 0.67 0.941377
Target:  5'- aGCG--CAGGGau-ACGGCGCCGCGu -3'
miRNA:   3'- aCGCaaGUUCCgacUGUCGCGGCGCu -5'
10400 5' -56.9 NC_002687.1 + 90563 0.68 0.922048
Target:  5'- gGUGcUCAAGGCcaACAGaCGCCGCa- -3'
miRNA:   3'- aCGCaAGUUCCGacUGUC-GCGGCGcu -5'
10400 5' -56.9 NC_002687.1 + 310781 0.68 0.922048
Target:  5'- uUGCacaGUUCGAgcacGGUUGGCGGUGUCGCa- -3'
miRNA:   3'- -ACG---CAAGUU----CCGACUGUCGCGGCGcu -5'
10400 5' -56.9 NC_002687.1 + 253453 0.68 0.916675
Target:  5'- cGCGcucUUCAAGGC-GGCGuGUGCgGCGGu -3'
miRNA:   3'- aCGC---AAGUUCCGaCUGU-CGCGgCGCU- -5'
10400 5' -56.9 NC_002687.1 + 11287 0.68 0.916675
Target:  5'- cGCGUUCAAGGa-GAUcGCcucucugcugGCCGCGGu -3'
miRNA:   3'- aCGCAAGUUCCgaCUGuCG----------CGGCGCU- -5'
10400 5' -56.9 NC_002687.1 + 183790 0.68 0.905285
Target:  5'- aUGCGauaUCuuguAGGCUGAUGGUaCCGCGGc -3'
miRNA:   3'- -ACGCa--AGu---UCCGACUGUCGcGGCGCU- -5'
10400 5' -56.9 NC_002687.1 + 118155 0.69 0.873148
Target:  5'- cUGCGUcgaaCGAGGaC-GACGGUGCCGCa- -3'
miRNA:   3'- -ACGCAa---GUUCC-GaCUGUCGCGGCGcu -5'
10400 5' -56.9 NC_002687.1 + 167910 0.69 0.866118
Target:  5'- gUGCGUcguUgGAGGCccGACGuUGCCGCGAa -3'
miRNA:   3'- -ACGCA---AgUUCCGa-CUGUcGCGGCGCU- -5'
10400 5' -56.9 NC_002687.1 + 249160 0.69 0.858899
Target:  5'- cGCG-UCAAGGCcGACGGCGauuggaCGCu- -3'
miRNA:   3'- aCGCaAGUUCCGaCUGUCGCg-----GCGcu -5'
10400 5' -56.9 NC_002687.1 + 297324 0.7 0.843908
Target:  5'- cGCGagCAGGGCUGACaaccuccugGGCGCUcCGGc -3'
miRNA:   3'- aCGCaaGUUCCGACUG---------UCGCGGcGCU- -5'
10400 5' -56.9 NC_002687.1 + 259800 0.7 0.843908
Target:  5'- aGCGaugUUCAuggccaAGGCgGGCAGCGCCGacaaGAu -3'
miRNA:   3'- aCGC---AAGU------UCCGaCUGUCGCGGCg---CU- -5'
10400 5' -56.9 NC_002687.1 + 226509 0.7 0.843908
Target:  5'- gGCGccgCuGGGaCUGAUGGCGCCGCu- -3'
miRNA:   3'- aCGCaa-GuUCC-GACUGUCGCGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.