miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10403 5' -55.5 NC_002687.1 + 295115 0.66 0.983798
Target:  5'- uGCGGaacucGCgAgcggcgCGCGCGCgGGGAGCa -3'
miRNA:   3'- uCGCCa----CGgUaa----GUGCGUGgUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 312431 0.66 0.983798
Target:  5'- aAGCGGcGCuCAcagCACGCGCCAuGGucauGCc -3'
miRNA:   3'- -UCGCCaCG-GUaa-GUGCGUGGU-CCu---UG- -5'
10403 5' -55.5 NC_002687.1 + 264707 0.66 0.983798
Target:  5'- gGGCGGccUG-CAUUCAa-CGCCAGGAAg -3'
miRNA:   3'- -UCGCC--ACgGUAAGUgcGUGGUCCUUg -5'
10403 5' -55.5 NC_002687.1 + 224864 0.66 0.983798
Target:  5'- cGGCGGcGCCGgcacggucggCACGCAagAGGAAg -3'
miRNA:   3'- -UCGCCaCGGUaa--------GUGCGUggUCCUUg -5'
10403 5' -55.5 NC_002687.1 + 284289 0.66 0.981931
Target:  5'- uGGUGG-GUCuuuuUUCcgGCaGCACCAGGGGCu -3'
miRNA:   3'- -UCGCCaCGGu---AAG--UG-CGUGGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 13187 0.66 0.981931
Target:  5'- gGGCGuGUGCCAcuggaGCGaCACagugAGGAACg -3'
miRNA:   3'- -UCGC-CACGGUaag--UGC-GUGg---UCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 278732 0.66 0.981931
Target:  5'- cGGUGGUGCCGggggaGCGCCuGGuagAGCg -3'
miRNA:   3'- -UCGCCACGGUaagugCGUGGuCC---UUG- -5'
10403 5' -55.5 NC_002687.1 + 90868 0.66 0.981931
Target:  5'- -uCGGUGCCAagcguaCugGCGCC-GGAAUu -3'
miRNA:   3'- ucGCCACGGUaa----GugCGUGGuCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 97558 0.66 0.981736
Target:  5'- cGGCGGUGUUguccguuuucaaaGUUCgaACGC-CCAGGGGa -3'
miRNA:   3'- -UCGCCACGG-------------UAAG--UGCGuGGUCCUUg -5'
10403 5' -55.5 NC_002687.1 + 135279 0.66 0.979907
Target:  5'- cGCGGUacGCCAgagCACucuuGCgaauaauuGCCGGGAGCu -3'
miRNA:   3'- uCGCCA--CGGUaa-GUG----CG--------UGGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 73266 0.66 0.979907
Target:  5'- -uCGGUGCCuuuucUCAUGCugCuGGAAa -3'
miRNA:   3'- ucGCCACGGua---AGUGCGugGuCCUUg -5'
10403 5' -55.5 NC_002687.1 + 225596 0.66 0.978614
Target:  5'- gGGUGGUGCUggagacggcggaggaGUggaggACGCACCGGuGGGCg -3'
miRNA:   3'- -UCGCCACGG---------------UAag---UGCGUGGUC-CUUG- -5'
10403 5' -55.5 NC_002687.1 + 2379 0.66 0.977719
Target:  5'- -uCGGUGUCGgucggcCACGC-CCAGGAGu -3'
miRNA:   3'- ucGCCACGGUaa----GUGCGuGGUCCUUg -5'
10403 5' -55.5 NC_002687.1 + 200153 0.66 0.97536
Target:  5'- -uCGGUGCCAaUCGC-CACCAccguauccccucGGGACc -3'
miRNA:   3'- ucGCCACGGUaAGUGcGUGGU------------CCUUG- -5'
10403 5' -55.5 NC_002687.1 + 254037 0.66 0.97536
Target:  5'- cGUGGUGCacgaCAUcccUCACGCGCCuAGGucgguACu -3'
miRNA:   3'- uCGCCACG----GUA---AGUGCGUGG-UCCu----UG- -5'
10403 5' -55.5 NC_002687.1 + 129413 0.67 0.972824
Target:  5'- aAGCuaucuauuGUGCaCA-UCACGC-CCGGGAACg -3'
miRNA:   3'- -UCGc-------CACG-GUaAGUGCGuGGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 98181 0.67 0.972824
Target:  5'- cAGCGGUGCCAgca--GUGCCAGcGGu- -3'
miRNA:   3'- -UCGCCACGGUaagugCGUGGUC-CUug -5'
10403 5' -55.5 NC_002687.1 + 204463 0.67 0.970104
Target:  5'- gAGCGGUcaaCAaacUCACGUAUCAGGAGu -3'
miRNA:   3'- -UCGCCAcg-GUa--AGUGCGUGGUCCUUg -5'
10403 5' -55.5 NC_002687.1 + 269868 0.67 0.970104
Target:  5'- uGGUGGUGCCAa-CACGUucugcacuuuaaAUCAGGAcACa -3'
miRNA:   3'- -UCGCCACGGUaaGUGCG------------UGGUCCU-UG- -5'
10403 5' -55.5 NC_002687.1 + 246902 0.67 0.967195
Target:  5'- cGCGGUGgCAUUUAgGUAUgaUAGGGAUg -3'
miRNA:   3'- uCGCCACgGUAAGUgCGUG--GUCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.