miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10403 5' -55.5 NC_002687.1 + 264057 1.09 0.006088
Target:  5'- gAGCGGUGCCAUUCACGCACCAGGAACu -3'
miRNA:   3'- -UCGCCACGGUAAGUGCGUGGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 205442 0.75 0.660039
Target:  5'- uGGCGGUGUCGUgggaCACGCugUGGGcACg -3'
miRNA:   3'- -UCGCCACGGUAa---GUGCGugGUCCuUG- -5'
10403 5' -55.5 NC_002687.1 + 21917 0.73 0.765197
Target:  5'- -cCGGUGCUc--CACGUugCAGGAGCa -3'
miRNA:   3'- ucGCCACGGuaaGUGCGugGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 46493 0.72 0.792032
Target:  5'- aGGUGGUGCCcaugAUUCGCGaACUuGGAACa -3'
miRNA:   3'- -UCGCCACGG----UAAGUGCgUGGuCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 135612 0.72 0.817663
Target:  5'- cGCGGUGCagcggUUugGCAaCGGGGACa -3'
miRNA:   3'- uCGCCACGgua--AGugCGUgGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 10947 0.71 0.856415
Target:  5'- cGGCGGUGuuuuacuCCAUUCucgUGCACCGuGGAAUg -3'
miRNA:   3'- -UCGCCAC-------GGUAAGu--GCGUGGU-CCUUG- -5'
10403 5' -55.5 NC_002687.1 + 37519 0.7 0.864518
Target:  5'- uGGCGGUGggaaCAUUUGCGUACCGGcAACc -3'
miRNA:   3'- -UCGCCACg---GUAAGUGCGUGGUCcUUG- -5'
10403 5' -55.5 NC_002687.1 + 279181 0.7 0.864518
Target:  5'- cGGCGGUGCCGgaaGCGUuu-GGGGACa -3'
miRNA:   3'- -UCGCCACGGUaagUGCGuggUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 309568 0.69 0.910326
Target:  5'- cGGCGGUGCCGccCGCGCugCAa---- -3'
miRNA:   3'- -UCGCCACGGUaaGUGCGugGUccuug -5'
10403 5' -55.5 NC_002687.1 + 297324 0.69 0.916014
Target:  5'- cGGCGGacUGCUugcggaacucgcGUgcggCGCGCGCgGGGAGCa -3'
miRNA:   3'- -UCGCC--ACGG------------UAa---GUGCGUGgUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 164727 0.69 0.921481
Target:  5'- aAGCG--GCCAUaUCAUGUACCcuGGGAGCa -3'
miRNA:   3'- -UCGCcaCGGUA-AGUGCGUGG--UCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 56615 0.69 0.926726
Target:  5'- gAG-GGUGCCGUcgCACGgaaaACCGGGAGa -3'
miRNA:   3'- -UCgCCACGGUAa-GUGCg---UGGUCCUUg -5'
10403 5' -55.5 NC_002687.1 + 98136 0.69 0.926726
Target:  5'- cAGCGGUGCCA---GCGgUGCCAGcAACg -3'
miRNA:   3'- -UCGCCACGGUaagUGC-GUGGUCcUUG- -5'
10403 5' -55.5 NC_002687.1 + 122446 0.69 0.931749
Target:  5'- gAGuCaGUGUCAcaUUCGCGCACCgcccuggguccAGGAGCa -3'
miRNA:   3'- -UC-GcCACGGU--AAGUGCGUGG-----------UCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 208600 0.69 0.931749
Target:  5'- cGGUGGUGCCGagaACGaCACCAaGGAc- -3'
miRNA:   3'- -UCGCCACGGUaagUGC-GUGGU-CCUug -5'
10403 5' -55.5 NC_002687.1 + 90004 0.69 0.931749
Target:  5'- gAGCaGGUGCCGUaagaUCGgGCACUGGauGGACa -3'
miRNA:   3'- -UCG-CCACGGUA----AGUgCGUGGUC--CUUG- -5'
10403 5' -55.5 NC_002687.1 + 302469 0.68 0.945066
Target:  5'- gGGCGGUGaaCCGcUUgACGCGCCGGcaguuuuGAACg -3'
miRNA:   3'- -UCGCCAC--GGU-AAgUGCGUGGUC-------CUUG- -5'
10403 5' -55.5 NC_002687.1 + 85366 0.67 0.956918
Target:  5'- cGGCgGGUGCCAccggccuUUCGCagacCGCgGGGGACg -3'
miRNA:   3'- -UCG-CCACGGU-------AAGUGc---GUGgUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 84099 0.67 0.956918
Target:  5'- -uCGGUGCCGcuccUUCugggACGCACCgcuucgaggucucGGGAACa -3'
miRNA:   3'- ucGCCACGGU----AAG----UGCGUGG-------------UCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 246463 0.67 0.960788
Target:  5'- -cCGGacuugGCCAgaUCuuuCGUACCAGGAACa -3'
miRNA:   3'- ucGCCa----CGGUa-AGu--GCGUGGUCCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.