miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10403 5' -55.5 NC_002687.1 + 2379 0.66 0.977719
Target:  5'- -uCGGUGUCGgucggcCACGC-CCAGGAGu -3'
miRNA:   3'- ucGCCACGGUaa----GUGCGuGGUCCUUg -5'
10403 5' -55.5 NC_002687.1 + 10947 0.71 0.856415
Target:  5'- cGGCGGUGuuuuacuCCAUUCucgUGCACCGuGGAAUg -3'
miRNA:   3'- -UCGCCAC-------GGUAAGu--GCGUGGU-CCUUG- -5'
10403 5' -55.5 NC_002687.1 + 13187 0.66 0.981931
Target:  5'- gGGCGuGUGCCAcuggaGCGaCACagugAGGAACg -3'
miRNA:   3'- -UCGC-CACGGUaag--UGC-GUGg---UCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 21917 0.73 0.765197
Target:  5'- -cCGGUGCUc--CACGUugCAGGAGCa -3'
miRNA:   3'- ucGCCACGGuaaGUGCGugGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 37519 0.7 0.864518
Target:  5'- uGGCGGUGggaaCAUUUGCGUACCGGcAACc -3'
miRNA:   3'- -UCGCCACg---GUAAGUGCGUGGUCcUUG- -5'
10403 5' -55.5 NC_002687.1 + 46493 0.72 0.792032
Target:  5'- aGGUGGUGCCcaugAUUCGCGaACUuGGAACa -3'
miRNA:   3'- -UCGCCACGG----UAAGUGCgUGGuCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 56615 0.69 0.926726
Target:  5'- gAG-GGUGCCGUcgCACGgaaaACCGGGAGa -3'
miRNA:   3'- -UCgCCACGGUAa-GUGCg---UGGUCCUUg -5'
10403 5' -55.5 NC_002687.1 + 73266 0.66 0.979907
Target:  5'- -uCGGUGCCuuuucUCAUGCugCuGGAAa -3'
miRNA:   3'- ucGCCACGGua---AGUGCGugGuCCUUg -5'
10403 5' -55.5 NC_002687.1 + 84099 0.67 0.956918
Target:  5'- -uCGGUGCCGcuccUUCugggACGCACCgcuucgaggucucGGGAACa -3'
miRNA:   3'- ucGCCACGGU----AAG----UGCGUGG-------------UCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 85366 0.67 0.956918
Target:  5'- cGGCgGGUGCCAccggccuUUCGCagacCGCgGGGGACg -3'
miRNA:   3'- -UCG-CCACGGU-------AAGUGc---GUGgUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 90004 0.69 0.931749
Target:  5'- gAGCaGGUGCCGUaagaUCGgGCACUGGauGGACa -3'
miRNA:   3'- -UCG-CCACGGUA----AGUgCGUGGUC--CUUG- -5'
10403 5' -55.5 NC_002687.1 + 90868 0.66 0.981931
Target:  5'- -uCGGUGCCAagcguaCugGCGCC-GGAAUu -3'
miRNA:   3'- ucGCCACGGUaa----GugCGUGGuCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 97558 0.66 0.981736
Target:  5'- cGGCGGUGUUguccguuuucaaaGUUCgaACGC-CCAGGGGa -3'
miRNA:   3'- -UCGCCACGG-------------UAAG--UGCGuGGUCCUUg -5'
10403 5' -55.5 NC_002687.1 + 98136 0.69 0.926726
Target:  5'- cAGCGGUGCCA---GCGgUGCCAGcAACg -3'
miRNA:   3'- -UCGCCACGGUaagUGC-GUGGUCcUUG- -5'
10403 5' -55.5 NC_002687.1 + 98181 0.67 0.972824
Target:  5'- cAGCGGUGCCAgca--GUGCCAGcGGu- -3'
miRNA:   3'- -UCGCCACGGUaagugCGUGGUC-CUug -5'
10403 5' -55.5 NC_002687.1 + 122446 0.69 0.931749
Target:  5'- gAGuCaGUGUCAcaUUCGCGCACCgcccuggguccAGGAGCa -3'
miRNA:   3'- -UC-GcCACGGU--AAGUGCGUGG-----------UCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 129413 0.67 0.972824
Target:  5'- aAGCuaucuauuGUGCaCA-UCACGC-CCGGGAACg -3'
miRNA:   3'- -UCGc-------CACG-GUaAGUGCGuGGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 135279 0.66 0.979907
Target:  5'- cGCGGUacGCCAgagCACucuuGCgaauaauuGCCGGGAGCu -3'
miRNA:   3'- uCGCCA--CGGUaa-GUG----CG--------UGGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 135612 0.72 0.817663
Target:  5'- cGCGGUGCagcggUUugGCAaCGGGGACa -3'
miRNA:   3'- uCGCCACGgua--AGugCGUgGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 136359 0.67 0.960788
Target:  5'- --aGGUGUCA--CAgGCGCCGGGAAa -3'
miRNA:   3'- ucgCCACGGUaaGUgCGUGGUCCUUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.