miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10403 5' -55.5 NC_002687.1 + 37519 0.7 0.864518
Target:  5'- uGGCGGUGggaaCAUUUGCGUACCGGcAACc -3'
miRNA:   3'- -UCGCCACg---GUAAGUGCGUGGUCcUUG- -5'
10403 5' -55.5 NC_002687.1 + 90868 0.66 0.981931
Target:  5'- -uCGGUGCCAagcguaCugGCGCC-GGAAUu -3'
miRNA:   3'- ucGCCACGGUaa----GugCGUGGuCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 13187 0.66 0.981931
Target:  5'- gGGCGuGUGCCAcuggaGCGaCACagugAGGAACg -3'
miRNA:   3'- -UCGC-CACGGUaag--UGC-GUGg---UCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 264707 0.66 0.983798
Target:  5'- gGGCGGccUG-CAUUCAa-CGCCAGGAAg -3'
miRNA:   3'- -UCGCC--ACgGUAAGUgcGUGGUCCUUg -5'
10403 5' -55.5 NC_002687.1 + 208600 0.69 0.931749
Target:  5'- cGGUGGUGCCGagaACGaCACCAaGGAc- -3'
miRNA:   3'- -UCGCCACGGUaagUGC-GUGGU-CCUug -5'
10403 5' -55.5 NC_002687.1 + 85366 0.67 0.956918
Target:  5'- cGGCgGGUGCCAccggccuUUCGCagacCGCgGGGGACg -3'
miRNA:   3'- -UCG-CCACGGU-------AAGUGc---GUGgUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 136359 0.67 0.960788
Target:  5'- --aGGUGUCA--CAgGCGCCGGGAAa -3'
miRNA:   3'- ucgCCACGGUaaGUgCGUGGUCCUUg -5'
10403 5' -55.5 NC_002687.1 + 280285 0.67 0.960788
Target:  5'- gAGCGGUGCgGaUgGgGCuuUCAGGAGCg -3'
miRNA:   3'- -UCGCCACGgUaAgUgCGu-GGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 129413 0.67 0.972824
Target:  5'- aAGCuaucuauuGUGCaCA-UCACGC-CCGGGAACg -3'
miRNA:   3'- -UCGc-------CACG-GUaAGUGCGuGGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 97558 0.66 0.981736
Target:  5'- cGGCGGUGUUguccguuuucaaaGUUCgaACGC-CCAGGGGa -3'
miRNA:   3'- -UCGCCACGG-------------UAAG--UGCGuGGUCCUUg -5'
10403 5' -55.5 NC_002687.1 + 225596 0.66 0.978614
Target:  5'- gGGUGGUGCUggagacggcggaggaGUggaggACGCACCGGuGGGCg -3'
miRNA:   3'- -UCGCCACGG---------------UAag---UGCGUGGUC-CUUG- -5'
10403 5' -55.5 NC_002687.1 + 246902 0.67 0.967195
Target:  5'- cGCGGUGgCAUUUAgGUAUgaUAGGGAUg -3'
miRNA:   3'- uCGCCACgGUAAGUgCGUG--GUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 279181 0.7 0.864518
Target:  5'- cGGCGGUGCCGgaaGCGUuu-GGGGACa -3'
miRNA:   3'- -UCGCCACGGUaagUGCGuggUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 73266 0.66 0.979907
Target:  5'- -uCGGUGCCuuuucUCAUGCugCuGGAAa -3'
miRNA:   3'- ucGCCACGGua---AGUGCGugGuCCUUg -5'
10403 5' -55.5 NC_002687.1 + 309568 0.69 0.910326
Target:  5'- cGGCGGUGCCGccCGCGCugCAa---- -3'
miRNA:   3'- -UCGCCACGGUaaGUGCGugGUccuug -5'
10403 5' -55.5 NC_002687.1 + 319452 0.67 0.960788
Target:  5'- -cCGGacuugGCCAgaUCuuuCGUACCAGGAACg -3'
miRNA:   3'- ucGCCa----CGGUa-AGu--GCGUGGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 135279 0.66 0.979907
Target:  5'- cGCGGUacGCCAgagCACucuuGCgaauaauuGCCGGGAGCu -3'
miRNA:   3'- uCGCCA--CGGUaa-GUG----CG--------UGGUCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 278732 0.66 0.981931
Target:  5'- cGGUGGUGCCGggggaGCGCCuGGuagAGCg -3'
miRNA:   3'- -UCGCCACGGUaagugCGUGGuCC---UUG- -5'
10403 5' -55.5 NC_002687.1 + 122446 0.69 0.931749
Target:  5'- gAGuCaGUGUCAcaUUCGCGCACCgcccuggguccAGGAGCa -3'
miRNA:   3'- -UC-GcCACGGU--AAGUGCGUGG-----------UCCUUG- -5'
10403 5' -55.5 NC_002687.1 + 84099 0.67 0.956918
Target:  5'- -uCGGUGCCGcuccUUCugggACGCACCgcuucgaggucucGGGAACa -3'
miRNA:   3'- ucGCCACGGU----AAG----UGCGUGG-------------UCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.