miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10404 3' -53.4 NC_002687.1 + 200830 0.66 0.995855
Target:  5'- cGGUGUAUCCACagcaAUC-GGAGCGAu -3'
miRNA:   3'- cCCAUAUAGGUGguc-UGGaCCUCGUU- -5'
10404 3' -53.4 NC_002687.1 + 21011 0.66 0.995855
Target:  5'- uGGGUGUAgcaCGagAGACCUcGGAGCu- -3'
miRNA:   3'- -CCCAUAUag-GUggUCUGGA-CCUCGuu -5'
10404 3' -53.4 NC_002687.1 + 46625 0.66 0.995126
Target:  5'- cGGGUccuUGUCCACCucggcgaAGAUCUGGAa--- -3'
miRNA:   3'- -CCCAu--AUAGGUGG-------UCUGGACCUcguu -5'
10404 3' -53.4 NC_002687.1 + 85715 0.66 0.994455
Target:  5'- cGGUGgcacCCGCCGGACCgacgGGAcccGCGGg -3'
miRNA:   3'- cCCAUaua-GGUGGUCUGGa---CCU---CGUU- -5'
10404 3' -53.4 NC_002687.1 + 207063 0.66 0.994455
Target:  5'- cGGUAUAgagggCACCcuugugcauGAUCUGGAGCAAg -3'
miRNA:   3'- cCCAUAUag---GUGGu--------CUGGACCUCGUU- -5'
10404 3' -53.4 NC_002687.1 + 84621 0.67 0.984665
Target:  5'- uGGGUcaGUCgCGCUGGACgUGaGAGCGAu -3'
miRNA:   3'- -CCCAuaUAG-GUGGUCUGgAC-CUCGUU- -5'
10404 3' -53.4 NC_002687.1 + 279130 0.68 0.973896
Target:  5'- cGGUAgcaaGagCACCAGuggcACCUGGGGCAGg -3'
miRNA:   3'- cCCAUa---UagGUGGUC----UGGACCUCGUU- -5'
10404 3' -53.4 NC_002687.1 + 107767 0.68 0.973636
Target:  5'- aGGUGUgcacacgcgucugAUCCGCaucaACCUGGAGCAAu -3'
miRNA:   3'- cCCAUA-------------UAGGUGguc-UGGACCUCGUU- -5'
10404 3' -53.4 NC_002687.1 + 307492 0.7 0.950843
Target:  5'- cGGUAgucgccCCACCAGGCCUGGuGGUc- -3'
miRNA:   3'- cCCAUaua---GGUGGUCUGGACC-UCGuu -5'
10404 3' -53.4 NC_002687.1 + 307858 0.72 0.879279
Target:  5'- uGGGa----CCACCAGGCCUGGuggGGCGAc -3'
miRNA:   3'- -CCCauauaGGUGGUCUGGACC---UCGUU- -5'
10404 3' -53.4 NC_002687.1 + 275555 1.08 0.010658
Target:  5'- gGGGUAUAUCCACCAGACCUGGAGCAAg -3'
miRNA:   3'- -CCCAUAUAGGUGGUCUGGACCUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.