miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10404 5' -47 NC_002687.1 + 66233 0.66 0.999999
Target:  5'- gAUUAcCUaCCAGCUCGUccUUGACGUGg -3'
miRNA:   3'- gUAGUuGA-GGUCGAGCAu-AGUUGUAC- -5'
10404 5' -47 NC_002687.1 + 126714 0.66 0.999999
Target:  5'- --aCGACUCCGGCUacucgcggGUAUCGAUg-- -3'
miRNA:   3'- guaGUUGAGGUCGAg-------CAUAGUUGuac -5'
10404 5' -47 NC_002687.1 + 200074 0.66 0.999999
Target:  5'- gGUCAcgaugACUUCAGC-CGcaaagGUCGACAUGc -3'
miRNA:   3'- gUAGU-----UGAGGUCGaGCa----UAGUUGUAC- -5'
10404 5' -47 NC_002687.1 + 280127 0.66 0.999999
Target:  5'- gAUgAACUCCcacGCaCGUGUCAGCAg- -3'
miRNA:   3'- gUAgUUGAGGu--CGaGCAUAGUUGUac -5'
10404 5' -47 NC_002687.1 + 287701 0.66 0.999999
Target:  5'- gCAUCGACcCCAccgugugugaagcuGCUCGcuUGUCAagGCAUGg -3'
miRNA:   3'- -GUAGUUGaGGU--------------CGAGC--AUAGU--UGUAC- -5'
10404 5' -47 NC_002687.1 + 77439 0.66 0.999999
Target:  5'- cCGUCGACgggAGCgUCGUGcCAGCAUGg -3'
miRNA:   3'- -GUAGUUGaggUCG-AGCAUaGUUGUAC- -5'
10404 5' -47 NC_002687.1 + 297915 0.67 0.999988
Target:  5'- -uUCGGCUCCAGC-CGcacgCAACAa- -3'
miRNA:   3'- guAGUUGAGGUCGaGCaua-GUUGUac -5'
10404 5' -47 NC_002687.1 + 123681 0.68 0.999979
Target:  5'- aCAUUAGCUCCAGggCGgaagacccccgcaugGUCAACGUc -3'
miRNA:   3'- -GUAGUUGAGGUCgaGCa--------------UAGUUGUAc -5'
10404 5' -47 NC_002687.1 + 169287 0.68 0.999978
Target:  5'- -----cCUCCAGCUCGUucUCGACGc- -3'
miRNA:   3'- guaguuGAGGUCGAGCAu-AGUUGUac -5'
10404 5' -47 NC_002687.1 + 200890 0.68 0.99997
Target:  5'- aCGUCGGCUCCAGC-Cu--UCAggaGCAUGc -3'
miRNA:   3'- -GUAGUUGAGGUCGaGcauAGU---UGUAC- -5'
10404 5' -47 NC_002687.1 + 199717 0.68 0.99997
Target:  5'- uGUCAGCUCCGGCgauguagcuguUCGcgcugcUGUCAACGc- -3'
miRNA:   3'- gUAGUUGAGGUCG-----------AGC------AUAGUUGUac -5'
10404 5' -47 NC_002687.1 + 328774 0.68 0.999947
Target:  5'- gCAUCGGCgaagCAGCUgGUGcCAGCAUGc -3'
miRNA:   3'- -GUAGUUGag--GUCGAgCAUaGUUGUAC- -5'
10404 5' -47 NC_002687.1 + 84662 0.68 0.999947
Target:  5'- -cUCAGCucaUCCGGuCUCGaUGUCAACAg- -3'
miRNA:   3'- guAGUUG---AGGUC-GAGC-AUAGUUGUac -5'
10404 5' -47 NC_002687.1 + 37632 0.69 0.999931
Target:  5'- aCAUCGACUUgGGCgacCGUcUCGACAa- -3'
miRNA:   3'- -GUAGUUGAGgUCGa--GCAuAGUUGUac -5'
10404 5' -47 NC_002687.1 + 271438 0.69 0.999931
Target:  5'- gGUCAAC-CCAGCUUGguUUGAUAUGg -3'
miRNA:   3'- gUAGUUGaGGUCGAGCauAGUUGUAC- -5'
10404 5' -47 NC_002687.1 + 98200 0.69 0.999883
Target:  5'- uCAUCGAUUCCAGCg-GUGcCAGCGg- -3'
miRNA:   3'- -GUAGUUGAGGUCGagCAUaGUUGUac -5'
10404 5' -47 NC_002687.1 + 212307 0.71 0.9994
Target:  5'- gCGUCgAACUCCGGCUCGcUGgcauccUCGGCGUc -3'
miRNA:   3'- -GUAG-UUGAGGUCGAGC-AU------AGUUGUAc -5'
10404 5' -47 NC_002687.1 + 101080 0.71 0.9994
Target:  5'- ---uGGCUCCAGCUCGUAUguuACAa- -3'
miRNA:   3'- guagUUGAGGUCGAGCAUAgu-UGUac -5'
10404 5' -47 NC_002687.1 + 219874 0.74 0.988337
Target:  5'- uCAUCGACugagaugauaccUCCAGCUUGUAUCGugAg- -3'
miRNA:   3'- -GUAGUUG------------AGGUCGAGCAUAGUugUac -5'
10404 5' -47 NC_002687.1 + 275519 1.11 0.035103
Target:  5'- aCAUCAACUCCAGCUCGUAUCAACAUGa -3'
miRNA:   3'- -GUAGUUGAGGUCGAGCAUAGUUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.