Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10409 | 3' | -59.3 | NC_002687.1 | + | 283548 | 1.12 | 0.002141 |
Target: 5'- gCCUGGUGCUGCCGCCCCUGUUGCUGCc -3' miRNA: 3'- -GGACCACGACGGCGGGGACAACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 291354 | 0.78 | 0.301302 |
Target: 5'- gCUGcUGCUGCCGCUgcugcuaCUGUUGCUGCu -3' miRNA: 3'- gGACcACGACGGCGGg------GACAACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 102816 | 0.76 | 0.387219 |
Target: 5'- aUCUGccGCUGCUGCgCCUGUcucUGCUGCa -3' miRNA: 3'- -GGACcaCGACGGCGgGGACA---ACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 102926 | 0.76 | 0.419229 |
Target: 5'- gCUGuUGCUGCUGUUgUUGUUGCUGCa -3' miRNA: 3'- gGACcACGACGGCGGgGACAACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 102887 | 0.76 | 0.419229 |
Target: 5'- gCUGuUGCUGCUGUUgUUGUUGCUGCa -3' miRNA: 3'- gGACcACGACGGCGGgGACAACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 208549 | 0.76 | 0.427479 |
Target: 5'- gCUGcUGCUGCUGCUgCUGcUGCUGCu -3' miRNA: 3'- gGACcACGACGGCGGgGACaACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 283309 | 0.74 | 0.505728 |
Target: 5'- uUCUGcUGUUGCUGUUCCUGcUGCUGCu -3' miRNA: 3'- -GGACcACGACGGCGGGGACaACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 11688 | 0.73 | 0.561142 |
Target: 5'- gCUGcuccUGCUGCCGCCgcuaCUGcUGCUGCu -3' miRNA: 3'- gGACc---ACGACGGCGGg---GACaACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 102960 | 0.72 | 0.599002 |
Target: 5'- gCCUGaagaauuUGUUGCUGCUgCUGUUGCUGUu -3' miRNA: 3'- -GGACc------ACGACGGCGGgGACAACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 284715 | 0.72 | 0.624773 |
Target: 5'- cUCUGGUGCugucacugcgauguUGCCGCUUCgaaUGCUGCu -3' miRNA: 3'- -GGACCACG--------------ACGGCGGGGacaACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 284769 | 0.72 | 0.646758 |
Target: 5'- aCCUGcuuaUGCUGCCGCUCCggaaGCUGUc -3' miRNA: 3'- -GGACc---ACGACGGCGGGGacaaCGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 102779 | 0.71 | 0.684816 |
Target: 5'- gCUGGUGCUGCaUGUgCUguaugUGCUGCa -3' miRNA: 3'- gGACCACGACG-GCGgGGaca--ACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 11775 | 0.7 | 0.699894 |
Target: 5'- aCUGcUGCUGCCGCUgCUGccaccgcuaccgcUGCUGCu -3' miRNA: 3'- gGACcACGACGGCGGgGACa------------ACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 308029 | 0.7 | 0.703645 |
Target: 5'- ---cGUGCagGCUGCCCCUGUguuugacggUGCUGUc -3' miRNA: 3'- ggacCACGa-CGGCGGGGACA---------ACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 173492 | 0.7 | 0.712984 |
Target: 5'- uUCUuGUGCUGCCGUuuCCCU-UUGUUGCu -3' miRNA: 3'- -GGAcCACGACGGCG--GGGAcAACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 293899 | 0.69 | 0.767496 |
Target: 5'- --gGGcUGCUGCUGUCgCUGcUGCUGUa -3' miRNA: 3'- ggaCC-ACGACGGCGGgGACaACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 20908 | 0.69 | 0.784906 |
Target: 5'- aUCUGGguggugUGCUGgaCGCUCCuuuuggaucUGUUGCUGCu -3' miRNA: 3'- -GGACC------ACGACg-GCGGGG---------ACAACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 62054 | 0.69 | 0.784906 |
Target: 5'- aCCUGGaUGUUGCCGUCCgac-UGCUGa -3' miRNA: 3'- -GGACC-ACGACGGCGGGgacaACGACg -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 298670 | 0.68 | 0.834036 |
Target: 5'- gCCUGGUGUgccccGgCGCCUCUucugcauaUGCUGCa -3' miRNA: 3'- -GGACCACGa----CgGCGGGGAca------ACGACG- -5' |
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10409 | 3' | -59.3 | NC_002687.1 | + | 284667 | 0.68 | 0.841702 |
Target: 5'- -gUGGaagGC-GCaGCCCCUGgUGCUGCc -3' miRNA: 3'- ggACCa--CGaCGgCGGGGACaACGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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