miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10409 3' -59.3 NC_002687.1 + 173492 0.7 0.712984
Target:  5'- uUCUuGUGCUGCCGUuuCCCU-UUGUUGCu -3'
miRNA:   3'- -GGAcCACGACGGCG--GGGAcAACGACG- -5'
10409 3' -59.3 NC_002687.1 + 308029 0.7 0.703645
Target:  5'- ---cGUGCagGCUGCCCCUGUguuugacggUGCUGUc -3'
miRNA:   3'- ggacCACGa-CGGCGGGGACA---------ACGACG- -5'
10409 3' -59.3 NC_002687.1 + 11775 0.7 0.699894
Target:  5'- aCUGcUGCUGCCGCUgCUGccaccgcuaccgcUGCUGCu -3'
miRNA:   3'- gGACcACGACGGCGGgGACa------------ACGACG- -5'
10409 3' -59.3 NC_002687.1 + 102779 0.71 0.684816
Target:  5'- gCUGGUGCUGCaUGUgCUguaugUGCUGCa -3'
miRNA:   3'- gGACCACGACG-GCGgGGaca--ACGACG- -5'
10409 3' -59.3 NC_002687.1 + 284769 0.72 0.646758
Target:  5'- aCCUGcuuaUGCUGCCGCUCCggaaGCUGUc -3'
miRNA:   3'- -GGACc---ACGACGGCGGGGacaaCGACG- -5'
10409 3' -59.3 NC_002687.1 + 284715 0.72 0.624773
Target:  5'- cUCUGGUGCugucacugcgauguUGCCGCUUCgaaUGCUGCu -3'
miRNA:   3'- -GGACCACG--------------ACGGCGGGGacaACGACG- -5'
10409 3' -59.3 NC_002687.1 + 102960 0.72 0.599002
Target:  5'- gCCUGaagaauuUGUUGCUGCUgCUGUUGCUGUu -3'
miRNA:   3'- -GGACc------ACGACGGCGGgGACAACGACG- -5'
10409 3' -59.3 NC_002687.1 + 11688 0.73 0.561142
Target:  5'- gCUGcuccUGCUGCCGCCgcuaCUGcUGCUGCu -3'
miRNA:   3'- gGACc---ACGACGGCGGg---GACaACGACG- -5'
10409 3' -59.3 NC_002687.1 + 283309 0.74 0.505728
Target:  5'- uUCUGcUGUUGCUGUUCCUGcUGCUGCu -3'
miRNA:   3'- -GGACcACGACGGCGGGGACaACGACG- -5'
10409 3' -59.3 NC_002687.1 + 208549 0.76 0.427479
Target:  5'- gCUGcUGCUGCUGCUgCUGcUGCUGCu -3'
miRNA:   3'- gGACcACGACGGCGGgGACaACGACG- -5'
10409 3' -59.3 NC_002687.1 + 102926 0.76 0.419229
Target:  5'- gCUGuUGCUGCUGUUgUUGUUGCUGCa -3'
miRNA:   3'- gGACcACGACGGCGGgGACAACGACG- -5'
10409 3' -59.3 NC_002687.1 + 102887 0.76 0.419229
Target:  5'- gCUGuUGCUGCUGUUgUUGUUGCUGCa -3'
miRNA:   3'- gGACcACGACGGCGGgGACAACGACG- -5'
10409 3' -59.3 NC_002687.1 + 102816 0.76 0.387219
Target:  5'- aUCUGccGCUGCUGCgCCUGUcucUGCUGCa -3'
miRNA:   3'- -GGACcaCGACGGCGgGGACA---ACGACG- -5'
10409 3' -59.3 NC_002687.1 + 291354 0.78 0.301302
Target:  5'- gCUGcUGCUGCCGCUgcugcuaCUGUUGCUGCu -3'
miRNA:   3'- gGACcACGACGGCGGg------GACAACGACG- -5'
10409 3' -59.3 NC_002687.1 + 283548 1.12 0.002141
Target:  5'- gCCUGGUGCUGCCGCCCCUGUUGCUGCc -3'
miRNA:   3'- -GGACCACGACGGCGGGGACAACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.