Results 41 - 60 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 13019 | 0.68 | 0.872937 |
Target: 5'- aGCAGagAGCuGguGaaaGGCAGCagGGUAGCa -3' miRNA: 3'- -UGUCa-UCGuCguCg--CCGUCG--UCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 295690 | 0.69 | 0.810822 |
Target: 5'- aAUAG-AGCGcgguGCAGCGG-AGCAGCGGg -3' miRNA: 3'- -UGUCaUCGU----CGUCGCCgUCGUCGUCg -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 102502 | 0.69 | 0.819185 |
Target: 5'- aACAGcAGCAGCaacAGCGaauuuuGCAGCaacaacaacAGCAGCa -3' miRNA: 3'- -UGUCaUCGUCG---UCGC------CGUCG---------UCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 297865 | 0.69 | 0.819185 |
Target: 5'- cCGGUGGCuGCGGCGaaCAGUAGCAa- -3' miRNA: 3'- uGUCAUCGuCGUCGCc-GUCGUCGUcg -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 283001 | 0.69 | 0.793653 |
Target: 5'- gGCuGUAGCAGCuguGCGuGguGCAaUAGCa -3' miRNA: 3'- -UGuCAUCGUCGu--CGC-CguCGUcGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 280305 | 0.69 | 0.83543 |
Target: 5'- uCAGgAGCGGUAGCGGauccacgaucacCGGCAucacGCGGCa -3' miRNA: 3'- uGUCaUCGUCGUCGCC------------GUCGU----CGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 279144 | 0.69 | 0.797132 |
Target: 5'- cCAGUGGCAcCuGgGGCAggaaaaagcgcgugcGCAGCGGCg -3' miRNA: 3'- uGUCAUCGUcGuCgCCGU---------------CGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 300600 | 0.69 | 0.819185 |
Target: 5'- -aAGUGGCGGaAGuCGGCGGUggaAGCGGUa -3' miRNA: 3'- ugUCAUCGUCgUC-GCCGUCG---UCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 310849 | 0.69 | 0.810822 |
Target: 5'- cGCAGaauuUGGCAGCGaaugguccGgGGCGcguGCGGCGGCg -3' miRNA: 3'- -UGUC----AUCGUCGU--------CgCCGU---CGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 282941 | 0.69 | 0.802309 |
Target: 5'- uACAucAGCAGCAGCaGGaaCAGCAaCAGCa -3' miRNA: 3'- -UGUcaUCGUCGUCG-CC--GUCGUcGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 309986 | 0.69 | 0.802309 |
Target: 5'- -gGGUGGgGGCAGCuuacGCAGaagaAGCAGCc -3' miRNA: 3'- ugUCAUCgUCGUCGc---CGUCg---UCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 89080 | 0.69 | 0.802309 |
Target: 5'- -uGGUGGUGGUGGUGGUGGUGGUGGUg -3' miRNA: 3'- ugUCAUCGUCGUCGCCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 173590 | 0.7 | 0.775944 |
Target: 5'- gGCGGaGGCGGaGGCGGgGGCGGaGGCg -3' miRNA: 3'- -UGUCaUCGUCgUCGCCgUCGUCgUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 327576 | 0.7 | 0.748506 |
Target: 5'- cGCGGaAGCAGaUGGCGacGCAGUAGguGCa -3' miRNA: 3'- -UGUCaUCGUC-GUCGC--CGUCGUCguCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 278949 | 0.7 | 0.775944 |
Target: 5'- uCGGUGGUGGCAGCgcagggGGgGGCAGaccCAGCg -3' miRNA: 3'- uGUCAUCGUCGUCG------CCgUCGUC---GUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 10341 | 0.7 | 0.775944 |
Target: 5'- gGCAGUuguGGCAGUgucauccgaaGGCGGaguGGCuGCGGCg -3' miRNA: 3'- -UGUCA---UCGUCG----------UCGCCg--UCGuCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 237119 | 0.7 | 0.784862 |
Target: 5'- aACAGccuGCAGCGGCugGGCAgGCucacGCGGCu -3' miRNA: 3'- -UGUCau-CGUCGUCG--CCGU-CGu---CGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 114101 | 0.7 | 0.757758 |
Target: 5'- uGCAGcaaAGCGucGCuGCGGCAGCGGUAaucGCg -3' miRNA: 3'- -UGUCa--UCGU--CGuCGCCGUCGUCGU---CG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 212363 | 0.7 | 0.757758 |
Target: 5'- aGCGGUGGUGGCAGUcuuggucgacguGGCgagGGgGGCGGCc -3' miRNA: 3'- -UGUCAUCGUCGUCG------------CCG---UCgUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 194488 | 0.7 | 0.775944 |
Target: 5'- aGCGGgcGCAgGCGGaCGGCGuuGaCAGCAGUg -3' miRNA: 3'- -UGUCauCGU-CGUC-GCCGU--C-GUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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