miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 208359 0.76 0.434583
Target:  5'- gAUGGgAGCAGCAGCGacgauggaAGCAGCAGCg -3'
miRNA:   3'- -UGUCaUCGUCGUCGCcg------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 277761 0.76 0.434583
Target:  5'- --cGUcuCAGCAGCucGGCAGCAGUAGCa -3'
miRNA:   3'- uguCAucGUCGUCG--CCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208506 0.76 0.434583
Target:  5'- gAUGGgAGCAGCAGCGacgauggaAGCAGCAGCg -3'
miRNA:   3'- -UGUCaUCGUCGUCGCcg------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 298427 0.76 0.452053
Target:  5'- cCGGUccaAGCAcgcgcGCGGCGGCGGCcGCGGCc -3'
miRNA:   3'- uGUCA---UCGU-----CGUCGCCGUCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 224324 0.76 0.452053
Target:  5'- gGCGGUGGCAGUgcuGGUGGUGGUGGCgauGGCg -3'
miRNA:   3'- -UGUCAUCGUCG---UCGCCGUCGUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 78117 0.76 0.452053
Target:  5'- aGCGGUGGUguuucGGCcguGGCGGCGGCgucugaaacGGCAGCa -3'
miRNA:   3'- -UGUCAUCG-----UCG---UCGCCGUCG---------UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 23964 0.76 0.460931
Target:  5'- --cGUGGCGGCguGGUGGUguGGCAGCAGUg -3'
miRNA:   3'- uguCAUCGUCG--UCGCCG--UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 12222 0.76 0.460931
Target:  5'- aGCcGUAaCAGCGGCgGGUGGCAGCAGUa -3'
miRNA:   3'- -UGuCAUcGUCGUCG-CCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 291747 0.75 0.478958
Target:  5'- aGCGcccgGGCaAGCAGCGaccGCAGCAGCAGCn -3'
miRNA:   3'- -UGUca--UCG-UCGUCGC---CGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 312224 0.75 0.4881
Target:  5'- aACGGaAGCgAGCGGCGG-AGCAGCGGg -3'
miRNA:   3'- -UGUCaUCG-UCGUCGCCgUCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 292789 0.75 0.515999
Target:  5'- aGCGGUGGCGGCcGCGGC-GCAcgGGCg -3'
miRNA:   3'- -UGUCAUCGUCGuCGCCGuCGUcgUCG- -5'
10410 3' -57.6 NC_002687.1 + 290818 0.74 0.544519
Target:  5'- -aAGUGGacguauCAGCGGCGGCAauuCAGCGGCa -3'
miRNA:   3'- ugUCAUC------GUCGUCGCCGUc--GUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 283183 0.74 0.554142
Target:  5'- aGCGGcAGCAaCAGgGGCGGCAGCAccagGCg -3'
miRNA:   3'- -UGUCaUCGUcGUCgCCGUCGUCGU----CG- -5'
10410 3' -57.6 NC_002687.1 + 164283 0.73 0.583286
Target:  5'- uCAGUGGCGGCAuCGGCAcCGGCAccgGCa -3'
miRNA:   3'- uGUCAUCGUCGUcGCCGUcGUCGU---CG- -5'
10410 3' -57.6 NC_002687.1 + 11348 0.73 0.583286
Target:  5'- aGCAGcGGguGuCGGa-GCAGCAGCAGCa -3'
miRNA:   3'- -UGUCaUCguC-GUCgcCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 303877 0.73 0.583286
Target:  5'- aACcGUAGCuGCAGCaGCAGUAGC-GCu -3'
miRNA:   3'- -UGuCAUCGuCGUCGcCGUCGUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 309188 0.73 0.612724
Target:  5'- cCGGUGGCAucgauGCuGCGGCGGagacuGGCGGCg -3'
miRNA:   3'- uGUCAUCGU-----CGuCGCCGUCg----UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 307803 0.73 0.612724
Target:  5'- gGCGGUGaCGGCGGUgacGGCAGCgauggugaugagGGCAGCg -3'
miRNA:   3'- -UGUCAUcGUCGUCG---CCGUCG------------UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 102400 0.73 0.612724
Target:  5'- aACAGauGCAGCAGauGCAGCAcauacagcacauGCAGCa -3'
miRNA:   3'- -UGUCauCGUCGUCgcCGUCGU------------CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 175091 0.73 0.622572
Target:  5'- gGCGGUuccGGCGGUuccGGCGGUuGCAGUAGUu -3'
miRNA:   3'- -UGUCA---UCGUCG---UCGCCGuCGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.