miRNA display CGI


Results 61 - 80 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 223491 0.73 0.622572
Target:  5'- uGCGGUGGCGGgGGCGGgggaAGCcguGGUGGCg -3'
miRNA:   3'- -UGUCAUCGUCgUCGCCg---UCG---UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 323327 0.72 0.681551
Target:  5'- ----cGGCAaCAGCaGCAGCAGCAGUa -3'
miRNA:   3'- ugucaUCGUcGUCGcCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 292125 0.72 0.685453
Target:  5'- aGCAGUAuGUAGUAGCcacgugcuuguauaGCAGCuGCAGCa -3'
miRNA:   3'- -UGUCAU-CGUCGUCGc-------------CGUCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 209003 0.71 0.691294
Target:  5'- gACAuUGGUguucagAGCAGCGuaAGUAGCAGCa -3'
miRNA:   3'- -UGUcAUCG------UCGUCGCcgUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 243680 0.71 0.691294
Target:  5'- uGCGGaacuCGGUcgaAGCGGguGCAGCGGCa -3'
miRNA:   3'- -UGUCauc-GUCG---UCGCCguCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 284363 0.71 0.691294
Target:  5'- cGCAGUGaCAGCaccagaGGCGGCgcguucAGCAGguGCa -3'
miRNA:   3'- -UGUCAUcGUCG------UCGCCG------UCGUCguCG- -5'
10410 3' -57.6 NC_002687.1 + 23663 0.71 0.700991
Target:  5'- aGCAGgcacgccAGCAGCAGaaGUAGCGGCAccuGCa -3'
miRNA:   3'- -UGUCa------UCGUCGUCgcCGUCGUCGU---CG- -5'
10410 3' -57.6 NC_002687.1 + 17866 0.71 0.710634
Target:  5'- uCAGU-GCcaAGCGuuGCGGCcGCAGCGGCu -3'
miRNA:   3'- uGUCAuCG--UCGU--CGCCGuCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 98189 0.71 0.710634
Target:  5'- aGCGGUGcCAGCGGUGcCAGCAGUgccAGCg -3'
miRNA:   3'- -UGUCAUcGUCGUCGCcGUCGUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 126706 0.71 0.710634
Target:  5'- gGCGGgcauCAGCAGCgaGGguGCAGCuGCa -3'
miRNA:   3'- -UGUCauc-GUCGUCG--CCguCGUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 201836 0.71 0.71926
Target:  5'- uGCGGgcGCGGacucCAGCGGCGGCuuggcacAGUGGCu -3'
miRNA:   3'- -UGUCauCGUC----GUCGCCGUCG-------UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 308868 0.71 0.729726
Target:  5'- uCGGUGGUGGgGGCGuCAGCGGgGGCu -3'
miRNA:   3'- uGUCAUCGUCgUCGCcGUCGUCgUCG- -5'
10410 3' -57.6 NC_002687.1 + 316067 0.71 0.729726
Target:  5'- --cGUGGCGGCAggauucgguGCGGCuGGCGGUGGUg -3'
miRNA:   3'- uguCAUCGUCGU---------CGCCG-UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 327576 0.7 0.748506
Target:  5'- cGCGGaAGCAGaUGGCGacGCAGUAGguGCa -3'
miRNA:   3'- -UGUCaUCGUC-GUCGC--CGUCGUCguCG- -5'
10410 3' -57.6 NC_002687.1 + 102580 0.7 0.757758
Target:  5'- aGCAGcaacAGCAaCAGCaaCAGCAGCAGCa -3'
miRNA:   3'- -UGUCa---UCGUcGUCGccGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 212363 0.7 0.757758
Target:  5'- aGCGGUGGUGGCAGUcuuggucgacguGGCgagGGgGGCGGCc -3'
miRNA:   3'- -UGUCAUCGUCGUCG------------CCG---UCgUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 114101 0.7 0.757758
Target:  5'- uGCAGcaaAGCGucGCuGCGGCAGCGGUAaucGCg -3'
miRNA:   3'- -UGUCa--UCGU--CGuCGCCGUCGUCGU---CG- -5'
10410 3' -57.6 NC_002687.1 + 18231 0.7 0.766906
Target:  5'- cACcGUcGCAGCAcCGGCgaaccccguGGCGGCAGCu -3'
miRNA:   3'- -UGuCAuCGUCGUcGCCG---------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 194488 0.7 0.775944
Target:  5'- aGCGGgcGCAgGCGGaCGGCGuuGaCAGCAGUg -3'
miRNA:   3'- -UGUCauCGU-CGUC-GCCGU--C-GUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 27773 0.7 0.775944
Target:  5'- -gGGUAGCuAGCAG-GGguGUuGCGGCg -3'
miRNA:   3'- ugUCAUCG-UCGUCgCCguCGuCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.