Results 101 - 120 of 136 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 332278 | 0.68 | 0.858497 |
Target: 5'- aACAGcGGCucacaccauuGCGGCGGCGGC-GCuugGGCg -3' miRNA: 3'- -UGUCaUCGu---------CGUCGCCGUCGuCG---UCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 98146 | 0.68 | 0.858497 |
Target: 5'- cCGGUGGUGcCAGCGGUGcCAGCGGUg -3' miRNA: 3'- uGUCAUCGUcGUCGCCGUcGUCGUCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 39923 | 0.68 | 0.865814 |
Target: 5'- cCGGauGCAGCAGCGuGUAG-AGCAGUc -3' miRNA: 3'- uGUCauCGUCGUCGC-CGUCgUCGUCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 328274 | 0.68 | 0.872233 |
Target: 5'- gACGGUGGCAgGCAGCGuuGGUGGacaacguCGGCg -3' miRNA: 3'- -UGUCAUCGU-CGUCGCcgUCGUC-------GUCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 13019 | 0.68 | 0.872937 |
Target: 5'- aGCAGagAGCuGguGaaaGGCAGCagGGUAGCa -3' miRNA: 3'- -UGUCa-UCGuCguCg--CCGUCG--UCGUCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 298347 | 0.68 | 0.872937 |
Target: 5'- cCAGUcGGaAGCGGUGGCGGCcGCAacGCa -3' miRNA: 3'- uGUCA-UCgUCGUCGCCGUCGuCGU--CG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 318629 | 0.68 | 0.879859 |
Target: 5'- uGCAaaGGCGGUGGCGGCguaAGC-GUAGCu -3' miRNA: 3'- -UGUcaUCGUCGUCGCCG---UCGuCGUCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 165941 | 0.67 | 0.885914 |
Target: 5'- -----cGCGGCAaacGCGGCGGCGGCcaagauaAGCu -3' miRNA: 3'- ugucauCGUCGU---CGCCGUCGUCG-------UCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 241877 | 0.67 | 0.886577 |
Target: 5'- cGCGGUGGCcaaCGGUGGCGGCGugacuuuCGGCa -3' miRNA: 3'- -UGUCAUCGuc-GUCGCCGUCGUc------GUCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 173620 | 0.67 | 0.893086 |
Target: 5'- gGCGGaGGCGGgGGCGGaGGCGGacgcggaAGCg -3' miRNA: 3'- -UGUCaUCGUCgUCGCCgUCGUCg------UCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 329824 | 0.67 | 0.893086 |
Target: 5'- cGCAGUGGCAGCgaucuuacaucAGCGGCAuCuu-GGCg -3' miRNA: 3'- -UGUCAUCGUCG-----------UCGCCGUcGucgUCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 10388 | 0.67 | 0.895631 |
Target: 5'- -gGGUGGagaaGGCAGCGgacgcgaccgugguuGCAGCAGgGGUg -3' miRNA: 3'- ugUCAUCg---UCGUCGC---------------CGUCGUCgUCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 226878 | 0.67 | 0.899383 |
Target: 5'- aGCAGUccCAGCGGCGccauCAGUcccAGCGGCg -3' miRNA: 3'- -UGUCAucGUCGUCGCc---GUCG---UCGUCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 281603 | 0.67 | 0.899383 |
Target: 5'- cCAGaGGCAGCAacGCGGCacgaacAGCAuucgugacGCGGCu -3' miRNA: 3'- uGUCaUCGUCGU--CGCCG------UCGU--------CGUCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 247647 | 0.67 | 0.899383 |
Target: 5'- uGCAGUugcucuauuuagAGCAGaCAGCa--AGCAGUAGCu -3' miRNA: 3'- -UGUCA------------UCGUC-GUCGccgUCGUCGUCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 282707 | 0.67 | 0.899383 |
Target: 5'- cGCGGaggaUAGCGGCAgucuccgacGCGGuCGGUAGCuaaGGCg -3' miRNA: 3'- -UGUC----AUCGUCGU---------CGCC-GUCGUCG---UCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 292676 | 0.67 | 0.901843 |
Target: 5'- uGCuGUGGCGGUgguuuugggcacgaaAGCGGCcGCGGCGu- -3' miRNA: 3'- -UGuCAUCGUCG---------------UCGCCGuCGUCGUcg -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 12265 | 0.67 | 0.903664 |
Target: 5'- cCAGUGGUcGCGaaacugggcgugacGCGGCuGC-GCAGCg -3' miRNA: 3'- uGUCAUCGuCGU--------------CGCCGuCGuCGUCG- -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 85429 | 0.67 | 0.905466 |
Target: 5'- gACAGaGGguGUGGCGGCGauugggguuuucGCGGUAGa -3' miRNA: 3'- -UGUCaUCguCGUCGCCGU------------CGUCGUCg -5' |
|||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 295563 | 0.67 | 0.905466 |
Target: 5'- gACGGUAGCGGCcaAGaUGGCGG-AGUuuuGGCg -3' miRNA: 3'- -UGUCAUCGUCG--UC-GCCGUCgUCG---UCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home