miRNA display CGI


Results 41 - 60 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 102580 0.7 0.757758
Target:  5'- aGCAGcaacAGCAaCAGCaaCAGCAGCAGCa -3'
miRNA:   3'- -UGUCa---UCGUcGUCGccGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 103398 0.66 0.922401
Target:  5'- uGCAGccuUGGCGGCcuuGGCuGCAGCcuucguggccuuGGCGGCc -3'
miRNA:   3'- -UGUC---AUCGUCG---UCGcCGUCG------------UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 114101 0.7 0.757758
Target:  5'- uGCAGcaaAGCGucGCuGCGGCAGCGGUAaucGCg -3'
miRNA:   3'- -UGUCa--UCGU--CGuCGCCGUCGUCGU---CG- -5'
10410 3' -57.6 NC_002687.1 + 123454 0.68 0.843299
Target:  5'- gGCAGaGGCAuacGCGGUGGUAGCGuugcGcCAGCu -3'
miRNA:   3'- -UGUCaUCGU---CGUCGCCGUCGU----C-GUCG- -5'
10410 3' -57.6 NC_002687.1 + 126706 0.71 0.710634
Target:  5'- gGCGGgcauCAGCAGCgaGGguGCAGCuGCa -3'
miRNA:   3'- -UGUCauc-GUCGUCG--CCguCGUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 130723 0.84 0.149447
Target:  5'- gGCGGUGGUGGUGGUGGCGGUGGCGGUg -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 153276 0.79 0.303435
Target:  5'- gACGGaAGCAGggacuuccaCAGCaGCAGCAGCAGCg -3'
miRNA:   3'- -UGUCaUCGUC---------GUCGcCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 164283 0.73 0.583286
Target:  5'- uCAGUGGCGGCAuCGGCAcCGGCAccgGCa -3'
miRNA:   3'- uGUCAUCGUCGUcGCCGUcGUCGU---CG- -5'
10410 3' -57.6 NC_002687.1 + 165941 0.67 0.885914
Target:  5'- -----cGCGGCAaacGCGGCGGCGGCcaagauaAGCu -3'
miRNA:   3'- ugucauCGUCGU---CGCCGUCGUCG-------UCG- -5'
10410 3' -57.6 NC_002687.1 + 173590 0.7 0.775944
Target:  5'- gGCGGaGGCGGaGGCGGgGGCGGaGGCg -3'
miRNA:   3'- -UGUCaUCGUCgUCGCCgUCGUCgUCG- -5'
10410 3' -57.6 NC_002687.1 + 173620 0.67 0.893086
Target:  5'- gGCGGaGGCGGgGGCGGaGGCGGacgcggaAGCg -3'
miRNA:   3'- -UGUCaUCGUCgUCGCCgUCGUCg------UCG- -5'
10410 3' -57.6 NC_002687.1 + 174023 0.67 0.916977
Target:  5'- uAUAGUGGCAGaUGGCGGUAGUcuucucaucGCAcGCa -3'
miRNA:   3'- -UGUCAUCGUC-GUCGCCGUCGu--------CGU-CG- -5'
10410 3' -57.6 NC_002687.1 + 175091 0.73 0.622572
Target:  5'- gGCGGUuccGGCGGUuccGGCGGUuGCAGUAGUu -3'
miRNA:   3'- -UGUCA---UCGUCG---UCGCCGuCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 175128 0.66 0.922401
Target:  5'- cGCAGUuuucAGCGGUuccAGCGGUucCGGCGGUu -3'
miRNA:   3'- -UGUCA----UCGUCG---UCGCCGucGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 184066 0.66 0.927605
Target:  5'- gACAGacucCAGCuGCaGGCGGCGGUAGg -3'
miRNA:   3'- -UGUCauc-GUCGuCG-CCGUCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 194488 0.7 0.775944
Target:  5'- aGCGGgcGCAgGCGGaCGGCGuuGaCAGCAGUg -3'
miRNA:   3'- -UGUCauCGU-CGUC-GCCGU--C-GUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 201836 0.71 0.71926
Target:  5'- uGCGGgcGCGGacucCAGCGGCGGCuuggcacAGUGGCu -3'
miRNA:   3'- -UGUCauCGUC----GUCGCCGUCG-------UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208182 1.01 0.011965
Target:  5'- aACGGUAGCAGCAGCaGCAGCAGCAGCa -3'
miRNA:   3'- -UGUCAUCGUCGUCGcCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208209 0.78 0.346002
Target:  5'- aGCAGcgacAGCAGCAGCGacgauggaAGCAGCAGCg -3'
miRNA:   3'- -UGUCa---UCGUCGUCGCcg------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208359 0.76 0.434583
Target:  5'- gAUGGgAGCAGCAGCGacgauggaAGCAGCAGCg -3'
miRNA:   3'- -UGUCaUCGUCGUCGCcg------UCGUCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.