Results 101 - 120 of 136 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10410 | 3' | -57.6 | NC_002687.1 | + | 283183 | 0.74 | 0.554142 |
Target: 5'- aGCGGcAGCAaCAGgGGCGGCAGCAccagGCg -3' miRNA: 3'- -UGUCaUCGUcGUCgCCGUCGUCGU----CG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 283895 | 0.81 | 0.222116 |
Target: 5'- ----cAGCAGCAGCGGCuggggcuugugagccAGCAGCGGCg -3' miRNA: 3'- ugucaUCGUCGUCGCCG---------------UCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 284363 | 0.71 | 0.691294 |
Target: 5'- cGCAGUGaCAGCaccagaGGCGGCgcguucAGCAGguGCa -3' miRNA: 3'- -UGUCAUcGUCG------UCGCCG------UCGUCguCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 290818 | 0.74 | 0.544519 |
Target: 5'- -aAGUGGacguauCAGCGGCGGCAauuCAGCGGCa -3' miRNA: 3'- ugUCAUC------GUCGUCGCCGUc--GUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 291714 | 1.11 | 0.002409 |
Target: 5'- aACAGUAGCAGCAGCGGCAGCAGCAGCa -3' miRNA: 3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 291747 | 0.75 | 0.478958 |
Target: 5'- aGCGcccgGGCaAGCAGCGaccGCAGCAGCAGCn -3' miRNA: 3'- -UGUca--UCG-UCGUCGC---CGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 292125 | 0.72 | 0.685453 |
Target: 5'- aGCAGUAuGUAGUAGCcacgugcuuguauaGCAGCuGCAGCa -3' miRNA: 3'- -UGUCAU-CGUCGUCGc-------------CGUCGuCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 292338 | 0.66 | 0.937347 |
Target: 5'- aGCAGUAuGCAGUAGCcGUAGgguuCAGC-GCg -3' miRNA: 3'- -UGUCAU-CGUCGUCGcCGUC----GUCGuCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 292676 | 0.67 | 0.901843 |
Target: 5'- uGCuGUGGCGGUgguuuugggcacgaaAGCGGCcGCGGCGu- -3' miRNA: 3'- -UGuCAUCGUCG---------------UCGCCGuCGUCGUcg -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 292789 | 0.75 | 0.515999 |
Target: 5'- aGCGGUGGCGGCcGCGGC-GCAcgGGCg -3' miRNA: 3'- -UGUCAUCGUCGuCGCCGuCGUcgUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 293528 | 0.87 | 0.105278 |
Target: 5'- aGCGGUacauguacAGCAGCAGCGaCAGCAGCAGCc -3' miRNA: 3'- -UGUCA--------UCGUCGUCGCcGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 295563 | 0.67 | 0.905466 |
Target: 5'- gACGGUAGCGGCcaAGaUGGCGG-AGUuuuGGCg -3' miRNA: 3'- -UGUCAUCGUCG--UC-GCCGUCgUCG---UCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 295690 | 0.69 | 0.810822 |
Target: 5'- aAUAG-AGCGcgguGCAGCGG-AGCAGCGGg -3' miRNA: 3'- -UGUCaUCGU----CGUCGCCgUCGUCGUCg -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 297865 | 0.69 | 0.819185 |
Target: 5'- cCGGUGGCuGCGGCGaaCAGUAGCAa- -3' miRNA: 3'- uGUCAUCGuCGUCGCc-GUCGUCGUcg -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 298347 | 0.68 | 0.872937 |
Target: 5'- cCAGUcGGaAGCGGUGGCGGCcGCAacGCa -3' miRNA: 3'- uGUCA-UCgUCGUCGCCGUCGuCGU--CG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 298427 | 0.76 | 0.452053 |
Target: 5'- cCGGUccaAGCAcgcgcGCGGCGGCGGCcGCGGCc -3' miRNA: 3'- uGUCA---UCGU-----CGUCGCCGUCGuCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 298890 | 0.66 | 0.927605 |
Target: 5'- uCGGUGGCuGUGGCuGUGGUGGUGGCu -3' miRNA: 3'- uGUCAUCGuCGUCGcCGUCGUCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 300600 | 0.69 | 0.819185 |
Target: 5'- -aAGUGGCGGaAGuCGGCGGUggaAGCGGUa -3' miRNA: 3'- ugUCAUCGUCgUC-GCCGUCG---UCGUCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 303877 | 0.73 | 0.583286 |
Target: 5'- aACcGUAGCuGCAGCaGCAGUAGC-GCu -3' miRNA: 3'- -UGuCAUCGuCGUCGcCGUCGUCGuCG- -5' |
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10410 | 3' | -57.6 | NC_002687.1 | + | 307642 | 0.84 | 0.149447 |
Target: 5'- gGCGGUGGCGGUGGUGGUgcuggcacgGGCGGCGGCg -3' miRNA: 3'- -UGUCAUCGUCGUCGCCG---------UCGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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