miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 298427 0.76 0.452053
Target:  5'- cCGGUccaAGCAcgcgcGCGGCGGCGGCcGCGGCc -3'
miRNA:   3'- uGUCA---UCGU-----CGUCGCCGUCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 298347 0.68 0.872937
Target:  5'- cCAGUcGGaAGCGGUGGCGGCcGCAacGCa -3'
miRNA:   3'- uGUCA-UCgUCGUCGCCGUCGuCGU--CG- -5'
10410 3' -57.6 NC_002687.1 + 297865 0.69 0.819185
Target:  5'- cCGGUGGCuGCGGCGaaCAGUAGCAa- -3'
miRNA:   3'- uGUCAUCGuCGUCGCc-GUCGUCGUcg -5'
10410 3' -57.6 NC_002687.1 + 295690 0.69 0.810822
Target:  5'- aAUAG-AGCGcgguGCAGCGG-AGCAGCGGg -3'
miRNA:   3'- -UGUCaUCGU----CGUCGCCgUCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 295563 0.67 0.905466
Target:  5'- gACGGUAGCGGCcaAGaUGGCGG-AGUuuuGGCg -3'
miRNA:   3'- -UGUCAUCGUCG--UC-GCCGUCgUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 293528 0.87 0.105278
Target:  5'- aGCGGUacauguacAGCAGCAGCGaCAGCAGCAGCc -3'
miRNA:   3'- -UGUCA--------UCGUCGUCGCcGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 292789 0.75 0.515999
Target:  5'- aGCGGUGGCGGCcGCGGC-GCAcgGGCg -3'
miRNA:   3'- -UGUCAUCGUCGuCGCCGuCGUcgUCG- -5'
10410 3' -57.6 NC_002687.1 + 292676 0.67 0.901843
Target:  5'- uGCuGUGGCGGUgguuuugggcacgaaAGCGGCcGCGGCGu- -3'
miRNA:   3'- -UGuCAUCGUCG---------------UCGCCGuCGUCGUcg -5'
10410 3' -57.6 NC_002687.1 + 292338 0.66 0.937347
Target:  5'- aGCAGUAuGCAGUAGCcGUAGgguuCAGC-GCg -3'
miRNA:   3'- -UGUCAU-CGUCGUCGcCGUC----GUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 292125 0.72 0.685453
Target:  5'- aGCAGUAuGUAGUAGCcacgugcuuguauaGCAGCuGCAGCa -3'
miRNA:   3'- -UGUCAU-CGUCGUCGc-------------CGUCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 291747 0.75 0.478958
Target:  5'- aGCGcccgGGCaAGCAGCGaccGCAGCAGCAGCn -3'
miRNA:   3'- -UGUca--UCG-UCGUCGC---CGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 291714 1.11 0.002409
Target:  5'- aACAGUAGCAGCAGCGGCAGCAGCAGCa -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 290818 0.74 0.544519
Target:  5'- -aAGUGGacguauCAGCGGCGGCAauuCAGCGGCa -3'
miRNA:   3'- ugUCAUC------GUCGUCGCCGUc--GUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 284363 0.71 0.691294
Target:  5'- cGCAGUGaCAGCaccagaGGCGGCgcguucAGCAGguGCa -3'
miRNA:   3'- -UGUCAUcGUCG------UCGCCG------UCGUCguCG- -5'
10410 3' -57.6 NC_002687.1 + 283895 0.81 0.222116
Target:  5'- ----cAGCAGCAGCGGCuggggcuugugagccAGCAGCGGCg -3'
miRNA:   3'- ugucaUCGUCGUCGCCG---------------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 283183 0.74 0.554142
Target:  5'- aGCGGcAGCAaCAGgGGCGGCAGCAccagGCg -3'
miRNA:   3'- -UGUCaUCGUcGUCgCCGUCGUCGU----CG- -5'
10410 3' -57.6 NC_002687.1 + 283001 0.69 0.793653
Target:  5'- gGCuGUAGCAGCuguGCGuGguGCAaUAGCa -3'
miRNA:   3'- -UGuCAUCGUCGu--CGC-CguCGUcGUCG- -5'
10410 3' -57.6 NC_002687.1 + 282941 0.69 0.802309
Target:  5'- uACAucAGCAGCAGCaGGaaCAGCAaCAGCa -3'
miRNA:   3'- -UGUcaUCGUCGUCG-CC--GUCGUcGUCG- -5'
10410 3' -57.6 NC_002687.1 + 282707 0.67 0.899383
Target:  5'- cGCGGaggaUAGCGGCAgucuccgacGCGGuCGGUAGCuaaGGCg -3'
miRNA:   3'- -UGUC----AUCGUCGU---------CGCC-GUCGUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 282158 0.82 0.195348
Target:  5'- uGCGGcGGCAGCGGCGggaguagggccuGCGGCGGCGGCu -3'
miRNA:   3'- -UGUCaUCGUCGUCGC------------CGUCGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.