miRNA display CGI


Results 41 - 60 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 282062 0.88 0.085869
Target:  5'- gGCAGgGGCcGUAGUGGCAGCAGCGGCg -3'
miRNA:   3'- -UGUCaUCGuCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 281929 0.8 0.283709
Target:  5'- -gAGUGGCAGCAucggucGCGGCAGgAGCAGg -3'
miRNA:   3'- ugUCAUCGUCGU------CGCCGUCgUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 281788 0.66 0.922401
Target:  5'- cGCGuGUGGgaaCGGCGGgGGCAGgGGCcggGGCg -3'
miRNA:   3'- -UGU-CAUC---GUCGUCgCCGUCgUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 281603 0.67 0.899383
Target:  5'- cCAGaGGCAGCAacGCGGCacgaacAGCAuucgugacGCGGCu -3'
miRNA:   3'- uGUCaUCGUCGU--CGCCG------UCGU--------CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 280956 0.84 0.153177
Target:  5'- gGCGGgGGCcugGGUGGCGGCAGCGGCGGCc -3'
miRNA:   3'- -UGUCaUCG---UCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 280305 0.69 0.83543
Target:  5'- uCAGgAGCGGUAGCGGauccacgaucacCGGCAucacGCGGCa -3'
miRNA:   3'- uGUCaUCGUCGUCGCC------------GUCGU----CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 279144 0.69 0.797132
Target:  5'- cCAGUGGCAcCuGgGGCAggaaaaagcgcgugcGCAGCGGCg -3'
miRNA:   3'- uGUCAUCGUcGuCgCCGU---------------CGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 278949 0.7 0.775944
Target:  5'- uCGGUGGUGGCAGCgcagggGGgGGCAGaccCAGCg -3'
miRNA:   3'- uGUCAUCGUCGUCG------CCgUCGUC---GUCG- -5'
10410 3' -57.6 NC_002687.1 + 277761 0.76 0.434583
Target:  5'- --cGUcuCAGCAGCucGGCAGCAGUAGCa -3'
miRNA:   3'- uguCAucGUCGUCG--CCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 254249 0.66 0.932098
Target:  5'- uGCGG-AGCGcugucaaccugcuGCAGaCGGUgucGCAGCAGCc -3'
miRNA:   3'- -UGUCaUCGU-------------CGUC-GCCGu--CGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 247647 0.67 0.899383
Target:  5'- uGCAGUugcucuauuuagAGCAGaCAGCa--AGCAGUAGCu -3'
miRNA:   3'- -UGUCA------------UCGUC-GUCGccgUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 247570 0.78 0.324199
Target:  5'- gGCAGUAGaAGCAGgGGaagcaGGCAGCAGUa -3'
miRNA:   3'- -UGUCAUCgUCGUCgCCg----UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 243680 0.71 0.691294
Target:  5'- uGCGGaacuCGGUcgaAGCGGguGCAGCGGCa -3'
miRNA:   3'- -UGUCauc-GUCG---UCGCCguCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 241877 0.67 0.886577
Target:  5'- cGCGGUGGCcaaCGGUGGCGGCGugacuuuCGGCa -3'
miRNA:   3'- -UGUCAUCGuc-GUCGCCGUCGUc------GUCG- -5'
10410 3' -57.6 NC_002687.1 + 240991 0.79 0.296744
Target:  5'- cGCAGUgaAGcCAGCAGCGGCuGUGGCAGa -3'
miRNA:   3'- -UGUCA--UC-GUCGUCGCCGuCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 237119 0.7 0.784862
Target:  5'- aACAGccuGCAGCGGCugGGCAgGCucacGCGGCu -3'
miRNA:   3'- -UGUCau-CGUCGUCG--CCGU-CGu---CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 226878 0.67 0.899383
Target:  5'- aGCAGUccCAGCGGCGccauCAGUcccAGCGGCg -3'
miRNA:   3'- -UGUCAucGUCGUCGCc---GUCG---UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 226812 0.87 0.095106
Target:  5'- cCGGUGGCGGUGGCGGUGGCGGUGGCg -3'
miRNA:   3'- uGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 226743 0.82 0.204917
Target:  5'- cGCAGgguucucucGGCAGCGGCGGUGGUGGUAGCg -3'
miRNA:   3'- -UGUCa--------UCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 225480 0.76 0.425996
Target:  5'- gACGGacgaAGCuuacGCGGCGGCGGCGGCGGa -3'
miRNA:   3'- -UGUCa---UCGu---CGUCGCCGUCGUCGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.