miRNA display CGI


Results 61 - 80 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 225054 0.66 0.941887
Target:  5'- gACuGUGcCGGCAGCuGgGGCuGCAGCc -3'
miRNA:   3'- -UGuCAUcGUCGUCGcCgUCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 224979 0.66 0.922401
Target:  5'- -gGGUGGUguuggGGaCAGCGGCGGUGG-AGCu -3'
miRNA:   3'- ugUCAUCG-----UC-GUCGCCGUCGUCgUCG- -5'
10410 3' -57.6 NC_002687.1 + 224449 0.96 0.024508
Target:  5'- -uGGUGGUGGCGGCGGCAGCGGCAGCg -3'
miRNA:   3'- ugUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 224324 0.76 0.452053
Target:  5'- gGCGGUGGCAGUgcuGGUGGUGGUGGCgauGGCg -3'
miRNA:   3'- -UGUCAUCGUCG---UCGCCGUCGUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 224198 0.91 0.056805
Target:  5'- gGCGGUGGCGGUGGCGGUGGCGGUGGCg -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 224168 0.82 0.209853
Target:  5'- gGCGGUGGCGGUGGCGGgGGCAGU-GCu -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCgUCGUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 224114 0.82 0.195348
Target:  5'- cGCGGUGGCGGUggcgcuggcgcuGGCGGUGGCGGUGGCg -3'
miRNA:   3'- -UGUCAUCGUCG------------UCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 223553 0.76 0.41751
Target:  5'- aGCAacAGCAGCAGUucgGGCAGCucgGGCAGCg -3'
miRNA:   3'- -UGUcaUCGUCGUCG---CCGUCG---UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 223491 0.73 0.622572
Target:  5'- uGCGGUGGCGGgGGCGGgggaAGCcguGGUGGCg -3'
miRNA:   3'- -UGUCAUCGUCgUCGCCg---UCG---UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 212363 0.7 0.757758
Target:  5'- aGCGGUGGUGGCAGUcuuggucgacguGGCgagGGgGGCGGCc -3'
miRNA:   3'- -UGUCAUCGUCGUCG------------CCG---UCgUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 210598 0.66 0.927605
Target:  5'- aACAGUAuCAGCAGCGaCAauacGCGucuccGCAGCa -3'
miRNA:   3'- -UGUCAUcGUCGUCGCcGU----CGU-----CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 210022 0.77 0.400852
Target:  5'- -uGGUGGCAGUcGUGGCAGUgguGCAGCu -3'
miRNA:   3'- ugUCAUCGUCGuCGCCGUCGu--CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 209900 0.8 0.265011
Target:  5'- gGCAGUGGUgcccguaguGGCAGUGGUGGCAGUGGUg -3'
miRNA:   3'- -UGUCAUCG---------UCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 209003 0.71 0.691294
Target:  5'- gACAuUGGUguucagAGCAGCGuaAGUAGCAGCa -3'
miRNA:   3'- -UGUcAUCG------UCGUCGCcgUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208560 0.78 0.361112
Target:  5'- gAUGGaAGCAGCAGCGacgauGgAGCAGCAGCg -3'
miRNA:   3'- -UGUCaUCGUCGUCGC-----CgUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208506 0.76 0.434583
Target:  5'- gAUGGgAGCAGCAGCGacgauggaAGCAGCAGCg -3'
miRNA:   3'- -UGUCaUCGUCGUCGCcg------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208359 0.76 0.434583
Target:  5'- gAUGGgAGCAGCAGCGacgauggaAGCAGCAGCg -3'
miRNA:   3'- -UGUCaUCGUCGUCGCcg------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208209 0.78 0.346002
Target:  5'- aGCAGcgacAGCAGCAGCGacgauggaAGCAGCAGCg -3'
miRNA:   3'- -UGUCa---UCGUCGUCGCcg------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208182 1.01 0.011965
Target:  5'- aACGGUAGCAGCAGCaGCAGCAGCAGCa -3'
miRNA:   3'- -UGUCAUCGUCGUCGcCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 201836 0.71 0.71926
Target:  5'- uGCGGgcGCGGacucCAGCGGCGGCuuggcacAGUGGCu -3'
miRNA:   3'- -UGUCauCGUC----GUCGCCGUCG-------UCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.