miRNA display CGI


Results 21 - 40 of 136 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 209900 0.8 0.265011
Target:  5'- gGCAGUGGUgcccguaguGGCAGUGGUGGCAGUGGUg -3'
miRNA:   3'- -UGUCAUCG---------UCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 224168 0.82 0.209853
Target:  5'- gGCGGUGGCGGUGGCGGgGGCAGU-GCu -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCgUCGUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 282062 0.88 0.085869
Target:  5'- gGCAGgGGCcGUAGUGGCAGCAGCGGCg -3'
miRNA:   3'- -UGUCaUCGuCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 10310 0.96 0.025166
Target:  5'- -aGGUAGCAGCAGUGGCGGCGGCAGUg -3'
miRNA:   3'- ugUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 224324 0.76 0.452053
Target:  5'- gGCGGUGGCAGUgcuGGUGGUGGUGGCgauGGCg -3'
miRNA:   3'- -UGUCAUCGUCG---UCGCCGUCGUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 10435 0.77 0.368837
Target:  5'- gUAGaAGCAGUAGCGGUAGCAuCGGCc -3'
miRNA:   3'- uGUCaUCGUCGUCGCCGUCGUcGUCG- -5'
10410 3' -57.6 NC_002687.1 + 69043 0.82 0.200083
Target:  5'- gAUGGUGGCGGCGGUGGCGGUGGUgucGGCg -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 224449 0.96 0.024508
Target:  5'- -uGGUGGUGGCGGCGGCAGCGGCAGCg -3'
miRNA:   3'- ugUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208560 0.78 0.361112
Target:  5'- gAUGGaAGCAGCAGCGacgauGgAGCAGCAGCg -3'
miRNA:   3'- -UGUCaUCGUCGUCGC-----CgUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 208182 1.01 0.011965
Target:  5'- aACGGUAGCAGCAGCaGCAGCAGCAGCa -3'
miRNA:   3'- -UGUCAUCGUCGUCGcCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 226743 0.82 0.204917
Target:  5'- cGCAGgguucucucGGCAGCGGCGGUGGUGGUAGCg -3'
miRNA:   3'- -UGUCa--------UCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 72556 0.8 0.277363
Target:  5'- gGCGGUGuGuCGGCGGCGGCGGCGuCGGCa -3'
miRNA:   3'- -UGUCAU-C-GUCGUCGCCGUCGUcGUCG- -5'
10410 3' -57.6 NC_002687.1 + 11441 0.83 0.168955
Target:  5'- aGCAGUAGCGGguGUaguagcaaccguGGUAGCAGCAGUa -3'
miRNA:   3'- -UGUCAUCGUCguCG------------CCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 226812 0.87 0.095106
Target:  5'- cCGGUGGCGGUGGCGGUGGCGGUGGCg -3'
miRNA:   3'- uGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 224198 0.91 0.056805
Target:  5'- gGCGGUGGCGGUGGCGGUGGCGGUGGCg -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 11381 0.95 0.031917
Target:  5'- cGCGGUAGCAGUAgccGCGGUAGCAGCAGCg -3'
miRNA:   3'- -UGUCAUCGUCGU---CGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 164283 0.73 0.583286
Target:  5'- uCAGUGGCGGCAuCGGCAcCGGCAccgGCa -3'
miRNA:   3'- uGUCAUCGUCGUcGCCGUcGUCGU---CG- -5'
10410 3' -57.6 NC_002687.1 + 12222 0.76 0.460931
Target:  5'- aGCcGUAaCAGCGGCgGGUGGCAGCAGUa -3'
miRNA:   3'- -UGuCAUcGUCGUCG-CCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 225480 0.76 0.425996
Target:  5'- gACGGacgaAGCuuacGCGGCGGCGGCGGCGGa -3'
miRNA:   3'- -UGUCa---UCGu---CGUCGCCGUCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 10069 0.77 0.376675
Target:  5'- nCAGUAGUAGCAGgGGguGUAGCAc- -3'
miRNA:   3'- uGUCAUCGUCGUCgCCguCGUCGUcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.