miRNA display CGI


Results 81 - 100 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 280305 0.69 0.83543
Target:  5'- uCAGgAGCGGUAGCGGauccacgaucacCGGCAucacGCGGCa -3'
miRNA:   3'- uGUCaUCGUCGUCGCC------------GUCGU----CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 18231 0.7 0.766906
Target:  5'- cACcGUcGCAGCAcCGGCgaaccccguGGCGGCAGCu -3'
miRNA:   3'- -UGuCAuCGUCGUcGCCG---------UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 34631 0.66 0.937347
Target:  5'- aACuuGUGGUA-CAGCGGCGGU-GUGGCa -3'
miRNA:   3'- -UGu-CAUCGUcGUCGCCGUCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 123454 0.68 0.843299
Target:  5'- gGCAGaGGCAuacGCGGUGGUAGCGuugcGcCAGCu -3'
miRNA:   3'- -UGUCaUCGU---CGUCGCCGUCGU----C-GUCG- -5'
10410 3' -57.6 NC_002687.1 + 283183 0.74 0.554142
Target:  5'- aGCGGcAGCAaCAGgGGCGGCAGCAccagGCg -3'
miRNA:   3'- -UGUCaUCGUcGUCgCCGUCGUCGU----CG- -5'
10410 3' -57.6 NC_002687.1 + 12265 0.67 0.903664
Target:  5'- cCAGUGGUcGCGaaacugggcgugacGCGGCuGC-GCAGCg -3'
miRNA:   3'- uGUCAUCGuCGU--------------CGCCGuCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 241877 0.67 0.886577
Target:  5'- cGCGGUGGCcaaCGGUGGCGGCGugacuuuCGGCa -3'
miRNA:   3'- -UGUCAUCGuc-GUCGCCGUCGUc------GUCG- -5'
10410 3' -57.6 NC_002687.1 + 318629 0.68 0.879859
Target:  5'- uGCAaaGGCGGUGGCGGCguaAGC-GUAGCu -3'
miRNA:   3'- -UGUcaUCGUCGUCGCCG---UCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 240991 0.79 0.296744
Target:  5'- cGCAGUgaAGcCAGCAGCGGCuGUGGCAGa -3'
miRNA:   3'- -UGUCA--UC-GUCGUCGCCGuCGUCGUCg -5'
10410 3' -57.6 NC_002687.1 + 130723 0.84 0.149447
Target:  5'- gGCGGUGGUGGUGGUGGCGGUGGCGGUg -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 291714 1.11 0.002409
Target:  5'- aACAGUAGCAGCAGCGGCAGCAGCAGCa -3'
miRNA:   3'- -UGUCAUCGUCGUCGCCGUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 98189 0.71 0.710634
Target:  5'- aGCGGUGcCAGCGGUGcCAGCAGUgccAGCg -3'
miRNA:   3'- -UGUCAUcGUCGUCGCcGUCGUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 316067 0.71 0.729726
Target:  5'- --cGUGGCGGCAggauucgguGCGGCuGGCGGUGGUg -3'
miRNA:   3'- uguCAUCGUCGU---------CGCCG-UCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 327576 0.7 0.748506
Target:  5'- cGCGGaAGCAGaUGGCGacGCAGUAGguGCa -3'
miRNA:   3'- -UGUCaUCGUC-GUCGC--CGUCGUCguCG- -5'
10410 3' -57.6 NC_002687.1 + 114101 0.7 0.757758
Target:  5'- uGCAGcaaAGCGucGCuGCGGCAGCGGUAaucGCg -3'
miRNA:   3'- -UGUCa--UCGU--CGuCGCCGUCGUCGU---CG- -5'
10410 3' -57.6 NC_002687.1 + 27773 0.7 0.775944
Target:  5'- -gGGUAGCuAGCAG-GGguGUuGCGGCg -3'
miRNA:   3'- ugUCAUCG-UCGUCgCCguCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 194488 0.7 0.775944
Target:  5'- aGCGGgcGCAgGCGGaCGGCGuuGaCAGCAGUg -3'
miRNA:   3'- -UGUCauCGU-CGUC-GCCGU--C-GUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 237119 0.7 0.784862
Target:  5'- aACAGccuGCAGCGGCugGGCAgGCucacGCGGCu -3'
miRNA:   3'- -UGUCau-CGUCGUCG--CCGU-CGu---CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 126706 0.71 0.710634
Target:  5'- gGCGGgcauCAGCAGCgaGGguGCAGCuGCa -3'
miRNA:   3'- -UGUCauc-GUCGUCG--CCguCGUCGuCG- -5'
10410 3' -57.6 NC_002687.1 + 298347 0.68 0.872937
Target:  5'- cCAGUcGGaAGCGGUGGCGGCcGCAacGCa -3'
miRNA:   3'- uGUCA-UCgUCGUCGCCGUCGuCGU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.