miRNA display CGI


Results 21 - 40 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 3' -57.6 NC_002687.1 + 226878 0.67 0.899383
Target:  5'- aGCAGUccCAGCGGCGccauCAGUcccAGCGGCg -3'
miRNA:   3'- -UGUCAucGUCGUCGCc---GUCG---UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 247647 0.67 0.899383
Target:  5'- uGCAGUugcucuauuuagAGCAGaCAGCa--AGCAGUAGCu -3'
miRNA:   3'- -UGUCA------------UCGUC-GUCGccgUCGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 281603 0.67 0.899383
Target:  5'- cCAGaGGCAGCAacGCGGCacgaacAGCAuucgugacGCGGCu -3'
miRNA:   3'- uGUCaUCGUCGU--CGCCG------UCGU--------CGUCG- -5'
10410 3' -57.6 NC_002687.1 + 282707 0.67 0.899383
Target:  5'- cGCGGaggaUAGCGGCAgucuccgacGCGGuCGGUAGCuaaGGCg -3'
miRNA:   3'- -UGUC----AUCGUCGU---------CGCC-GUCGUCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 10388 0.67 0.895631
Target:  5'- -gGGUGGagaaGGCAGCGgacgcgaccgugguuGCAGCAGgGGUg -3'
miRNA:   3'- ugUCAUCg---UCGUCGC---------------CGUCGUCgUCG- -5'
10410 3' -57.6 NC_002687.1 + 173620 0.67 0.893086
Target:  5'- gGCGGaGGCGGgGGCGGaGGCGGacgcggaAGCg -3'
miRNA:   3'- -UGUCaUCGUCgUCGCCgUCGUCg------UCG- -5'
10410 3' -57.6 NC_002687.1 + 329824 0.67 0.893086
Target:  5'- cGCAGUGGCAGCgaucuuacaucAGCGGCAuCuu-GGCg -3'
miRNA:   3'- -UGUCAUCGUCG-----------UCGCCGUcGucgUCG- -5'
10410 3' -57.6 NC_002687.1 + 241877 0.67 0.886577
Target:  5'- cGCGGUGGCcaaCGGUGGCGGCGugacuuuCGGCa -3'
miRNA:   3'- -UGUCAUCGuc-GUCGCCGUCGUc------GUCG- -5'
10410 3' -57.6 NC_002687.1 + 165941 0.67 0.885914
Target:  5'- -----cGCGGCAaacGCGGCGGCGGCcaagauaAGCu -3'
miRNA:   3'- ugucauCGUCGU---CGCCGUCGUCG-------UCG- -5'
10410 3' -57.6 NC_002687.1 + 318629 0.68 0.879859
Target:  5'- uGCAaaGGCGGUGGCGGCguaAGC-GUAGCu -3'
miRNA:   3'- -UGUcaUCGUCGUCGCCG---UCGuCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 13019 0.68 0.872937
Target:  5'- aGCAGagAGCuGguGaaaGGCAGCagGGUAGCa -3'
miRNA:   3'- -UGUCa-UCGuCguCg--CCGUCG--UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 298347 0.68 0.872937
Target:  5'- cCAGUcGGaAGCGGUGGCGGCcGCAacGCa -3'
miRNA:   3'- uGUCA-UCgUCGUCGCCGUCGuCGU--CG- -5'
10410 3' -57.6 NC_002687.1 + 328274 0.68 0.872233
Target:  5'- gACGGUGGCAgGCAGCGuuGGUGGacaacguCGGCg -3'
miRNA:   3'- -UGUCAUCGU-CGUCGCcgUCGUC-------GUCG- -5'
10410 3' -57.6 NC_002687.1 + 39923 0.68 0.865814
Target:  5'- cCGGauGCAGCAGCGuGUAG-AGCAGUc -3'
miRNA:   3'- uGUCauCGUCGUCGC-CGUCgUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 332278 0.68 0.858497
Target:  5'- aACAGcGGCucacaccauuGCGGCGGCGGC-GCuugGGCg -3'
miRNA:   3'- -UGUCaUCGu---------CGUCGCCGUCGuCG---UCG- -5'
10410 3' -57.6 NC_002687.1 + 98146 0.68 0.858497
Target:  5'- cCGGUGGUGcCAGCGGUGcCAGCGGUg -3'
miRNA:   3'- uGUCAUCGUcGUCGCCGUcGUCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 330562 0.68 0.85099
Target:  5'- -gAGUGGUGGUGGCGuGCAcauGCcGGCAGCc -3'
miRNA:   3'- ugUCAUCGUCGUCGC-CGU---CG-UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 12031 0.68 0.843299
Target:  5'- uGCAGcAGCAGCaAGUGcagaaaaagacaGCAGUguAGCAGCu -3'
miRNA:   3'- -UGUCaUCGUCG-UCGC------------CGUCG--UCGUCG- -5'
10410 3' -57.6 NC_002687.1 + 123454 0.68 0.843299
Target:  5'- gGCAGaGGCAuacGCGGUGGUAGCGuugcGcCAGCu -3'
miRNA:   3'- -UGUCaUCGU---CGUCGCCGUCGU----C-GUCG- -5'
10410 3' -57.6 NC_002687.1 + 17633 0.68 0.841739
Target:  5'- cAUGGUGGauguccgcuccaAGCGuuGCGGCcGCAGCGGCu -3'
miRNA:   3'- -UGUCAUCg-----------UCGU--CGCCGuCGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.